Glyma17g13510 - SoyBase

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Report for Sequence Feature Glyma17g13510

Feature Type:	gene_model
Chromosome:	Gm17
Start:	10335268
stop:	10339506
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g13510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24760	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr4:12761482-12763564 REVERSE LENGTH=365	SoyBase	E_val: 1.00E-179	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008236	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity	SoyBase	N/A	ISS
KOG1552	KOG	Predicted alpha/beta hydrolase	JGI		ISS
PTHR12277	Panther	UNCHARACTERIZED	JGI		ISS
PTHR12277:SF8	Panther	UNCHARACTERIZED	JGI		ISS
PF00326	PFAM	Prolyl oligopeptidase family	JGI		ISS
UniRef100_B9RAQ5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein bem46, putative n=1 Tax=Ricinus communis RepID=B9RAQ5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MUK7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUK7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g13510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g13510

Paralog	Evidence	Comments
Glyma05g02840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g13510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g126100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g13510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g13510

Limit To All Plant Sequences

>Glyma17g13510.1   sequence type=CDS   gene model=Glyma17g13510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGTGTAACTTCTTCTATGGCGGCGAAGATGGCGTTTTTTCCGCCTAGCCCGCCGTCGTACGAGGTGGTGGAGGAAGCGGCGACGGGGGCGTTGGTGTTGGAGGCATTTCCTCGGCGCGAGAACGTGAGGGTGGTGAAATTCGGGACTCGACGTGGAAGTGAGATTGTTGGGGTGTATATTGCGCACCCCATGGCCAAATCCACCATCCTTTACTCTCATGGGAATGCGGCTGATATCGGACACATGCTTGAGCTCTATGTGGATCTAAGTACCCACTTGCGTGTTAATCTTTTTGGATATGATTACTCTGGTTATGGGCAGTCATCAGGAAAGCCAAGTGAGAATAATACTTATGCTGACATTGAAGCTGCATATAAGTATCTTGAAGAGAACTATGGTACTAAGCAGGAAGACATAATCCTTTATGGTCAATCAGTTGGAAGTGGTCCTACTTTGGATCTTGCCACTCGTTTACCCCGACTAAGGGCTGTTGTTCTCCACAGTCCTATACTATCAGGATTGAGAGTCATGTACCCTGTGAAACGGACATATTGGTTTGACATTTACAAGAACATTGACAAAATTCCATTGGTGAAGTGTCCAGTGCTGATAATTCATGGTACCGATGATGAGGTTGTCGATTGCTCTCATGGCAAGCATTTGTGGGAACTTTGTAAAGAGAAGTATGAACCTTTATGGCTCAAAGGAGGGAACCACTGTAATCTGGAACTTTATCCAGAATACCTTCGACATCTCAGAAAATTCATATCGATAATAGAAAAGTCACCATCACAATGGCAAACTTTGTGGAGAAGCATAGGTGGAGTTGAAGAAGCCAGAAGAAGTGTTGATTGTTTTGAAGCTCCAAGGATGAGTGCAGATCTAAGGGACAAACCAAGGAAAAGCACTGATAAACAAGAACAACTGAAATTTCAAGGGCATAAGTTGAGTAATGTTGAAACAGTAGAGAAATCAAGGATCTCTTTTGACCATGTGGCAGGATCACAAAGAAACAAAGAGAACCACGATAAATCCCGGAAAAGTGTTGATGTTCATTTTGGGAGGACGAGGAAGAGCCTTGACTGGCTGGATAAAATTCGAGCTCGCTGA

Predicted protein sequences of Glyma17g13510

Limit To All Plant Sequences

>Glyma17g13510.1   sequence type=predicted peptide   gene model=Glyma17g13510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGVTSSMAAKMAFFPPSPPSYEVVEEAATGALVLEAFPRRENVRVVKFGTRRGSEIVGVYIAHPMAKSTILYSHGNAADIGHMLELYVDLSTHLRVNLFGYDYSGYGQSSGKPSENNTYADIEAAYKYLEENYGTKQEDIILYGQSVGSGPTLDLATRLPRLRAVVLHSPILSGLRVMYPVKRTYWFDIYKNIDKIPLVKCPVLIIHGTDDEVVDCSHGKHLWELCKEKYEPLWLKGGNHCNLELYPEYLRHLRKFISIIEKSPSQWQTLWRSIGGVEEARRSVDCFEAPRMSADLRDKPRKSTDKQEQLKFQGHKLSNVETVEKSRISFDHVAGSQRNKENHDKSRKSVDVHFGRTRKSLDWLDKIRAR*

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