Glyma17g13460 - SoyBase

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Report for Sequence Feature Glyma17g13460

Feature Type:	gene_model
Chromosome:	Gm17
Start:	10302705
stop:	10306276
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g13460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G39890	AT	Annotation by Michelle Graham. TAIR10: proline transporter 1 \| chr2:16656022-16658202 FORWARD LENGTH=442	SoyBase	E_val: 6.00E-114	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015193	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-proline transmembrane transporter activity	SoyBase	N/A	ISS
KOG1303	KOG	Amino acid transporters	JGI		ISS
PTHR22950	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PF01490	PFAM	Transmembrane amino acid transporter protein	JGI		ISS
UniRef100_F2Z8K2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Proline transporter n=1 Tax=Elaeis guineensis RepID=F2Z8K2_ELAGV	SoyBase	E_val: 2.00E-116	ISS
UniRef100_UPI000233EF58	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EF58 related cluster n=1 Tax=unknown RepID=UPI000233EF58	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g13460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g13460

Paralog	Evidence	Comments
Glyma05g02790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g13460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g125600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g13460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g13460

Limit To All Plant Sequences

>Glyma17g13460.2   sequence type=CDS   gene model=Glyma17g13460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCACTCTACTGGTCAATGGTCATATTTATTTCAGCCTGAATATTCCATGCTACAGCCGTTGTGATCATTTAAGGAGCAAAAACTTGTTCTTTTCCACAGATCTAGAATTCGCCATGGATGTTGAAGGAAGAGCCAGCAAGGGAAAGCCTCTCACTCTGAACCTTGAACAAGGTCAAGAAAAGGGTACCCAAAATGATGATTATGGTCTCGCTTCTGCTCATAGCATTGACCGAGATTCGTGGCAACAAGTAGGGTTGATGCTGGTGACAAGCTTCAATTGCGGGTGGATATTAAGTTTTTCTAATCTGTGTTTGTGGCCATTGGGTTGGACTTGGGGTATCATATGCCTTATTGTTGTGGGATTCTACACTGCCTATGCAAACTGGCTCTTGGCAGCATTTCATTTCATTGATGACCGCAGATTCATTAGATACAGAGATCTTATGGGATATGTTTACGGCAAGAGTATGTACCACCTCACCTGGGTTTTCCAGTTTTTGACCCTTCTTCTTGGAAATATGGGTTTCATCCTCCTCGGAGGCAAGGCACTTAAGGCAATAAACTCAGAATTTAGTGATTCTTCCCTGAGGCTCCAATACTACATAGTCATCACAGGAGCTGCTTACTTCTTTTATTCCTTCTTCTTCCCAACAATATCTGCGATGAGAAATTGGCTGGGAGCTTCAGCGTTGCTCACTTTCACATATATAATATTTCTTCTAATTGTTTTAGTTAAAGATGGAAAATCAAATTCGAATAGGGATTATGATATTAGCGGAAGTGAAGTGAGCAAAATTTTCAATGCTTTTGGTGCCATCTCCGCAGTCATTGTTACCAACACGAGTGGCTTGCTCCCCGAAATTCAGTCCACGCTACGTAAGCCAGCAGTGAAGAACATGAGGAAGGCCCTGTATTTGCAGTATACAGTGGGAGTTCTGTTCTATTATGGTGTTACCGTAATCGGATATTGGGCTTATGGAACAATGGTGTCGGCATACCTTCCAGAAAACTTAAGTGGTCCCAAATGGATTAATGTCCTCATCAATGCCATCGTCTTTTTGCAGTCCATAGTCTCCCAACATATGTTTGTAGCACCAATTCATGAGGCTTTGGACACTAAATTCCTAGAAATTGACAAGCCCATGCATTCAGGGGAGAACTTGAAACGCTTATTTCTCCTACGTGCGTTTTTCTTTACAGGGAACACATTCGTTGCTGCAGCCTTTCCTTTTATGAGTGACTTTGTAAACTTTCTTGGCTCATTTTCACTCGTTCCTCTGACCTTCATGTTCCCTAGCATGGTCTTCATCAAGGTTAAGGGAAGAACAGCTAGAATAGAGAAGAAGGCGTGGCACTGGTTCAACATCGTTTTTTCTTTTCTGCTCACAATTGCAACCACAATTTCAGCAGTACGGTTGATAGTCAACAACATCCAAAAGTATCATTTCTTTGCAGATGCATGA

Predicted protein sequences of Glyma17g13460

Limit To All Plant Sequences

>Glyma17g13460.2   sequence type=predicted peptide   gene model=Glyma17g13460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTLLVNGHIYFSLNIPCYSRCDHLRSKNLFFSTDLEFAMDVEGRASKGKPLTLNLEQGQEKGTQNDDYGLASAHSIDRDSWQQVGLMLVTSFNCGWILSFSNLCLWPLGWTWGIICLIVVGFYTAYANWLLAAFHFIDDRRFIRYRDLMGYVYGKSMYHLTWVFQFLTLLLGNMGFILLGGKALKAINSEFSDSSLRLQYYIVITGAAYFFYSFFFPTISAMRNWLGASALLTFTYIIFLLIVLVKDGKSNSNRDYDISGSEVSKIFNAFGAISAVIVTNTSGLLPEIQSTLRKPAVKNMRKALYLQYTVGVLFYYGVTVIGYWAYGTMVSAYLPENLSGPKWINVLINAIVFLQSIVSQHMFVAPIHEALDTKFLEIDKPMHSGENLKRLFLLRAFFFTGNTFVAAAFPFMSDFVNFLGSFSLVPLTFMFPSMVFIKVKGRTARIEKKAWHWFNIVFSFLLTIATTISAVRLIVNNIQKYHFFADA*

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