SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G50210 | AT | Annotation by Michelle Graham. TAIR10: quinolinate synthase | chr5:20442803-20445706 FORWARD LENGTH=718 | SoyBase | E_val: 0 | ISS |
| GO:0009060 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aerobic respiration | SoyBase | N/A | ISS |
| GO:0009435 | GO-bp | Annotation by Michelle Graham. GO Biological Process: NAD biosynthetic process | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0051176 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of sulfur metabolic process | SoyBase | N/A | ISS |
| GO:0051347 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transferase activity | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0008047 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0008987 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: quinolinate synthetase A activity | SoyBase | N/A | ISS |
| GO:0042803 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity | SoyBase | N/A | ISS |
| GO:0051539 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 4 iron, 4 sulfur cluster binding | SoyBase | N/A | ISS |
| PF02445 | PFAM | Quinolinate synthetase A protein | JGI | ISS | |
| UniRef100_Q9FGS4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAF26953.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FGS4_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EF57 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EF57 related cluster n=1 Tax=unknown RepID=UPI000233EF57 | SoyBase | E_val: 0 | ISS |
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Glyma17g13410 not represented in the dataset |
Glyma17g13410 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g02710 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g125100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g13410.2 sequence type=transcript gene model=Glyma17g13410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTCAGGACTTATTCTTCTCAACCGCCTTCTCACTTTTGCAGTTATTTTAACCCTTCTTTACCTCTTTCGTTCCAATTCAACACCTCACTAGCCATGCCTGTCAACACCACTCCCTCCTTCTTTTCAACCTCACGGAACGCAACAAACCCCTTCTTCCTCCAACCACTTGCGAAAAGTAGTAGTAGTATTAGCGAAATATCTGTTCCCTAATGAGTTAAAAGTTGATGAACTAGTCAATGTGCTGAAGGAGAAGAAAATTGGTGTTGTTGCACACTTTTACATGGATCCCGAGGTCCAAGGCATTTTAACTGCTGCTCAAAAGCAGTGGCCACATATCCATTTATCTGATTCACTGGTCATGGCAGATTCAGCAGTCAAAATGGCAAAAGCTGGATGCCAATTCATAACAGTTCTAGGTGTCGATTTTATGTCAGAAAATGTGCGTGCCATCCTTGATCAAGCTGGTTTTAGTGAGTTGGCGTGTATAGGATGTCAAATAAGCAAATTGGCTGTTCTCTGGCTGATGCTGCAGCTACTCCTACTTACATGGAATATCTTGCGGCTGCTTCTAGGTCTACTTCTTTGCATGTCATATACATTAACACTAAGTTAGAGACAAAGGCATATGCTCATGAGCTTGTGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAGGCATTTGCTCAAGTTCCAGATTTTAGCATATTTTATGGACCTGATTCTTACATGGGTGCAAATATCAAAGATTTGTTCCAACAAATGACAAAAATGACTGATGAAGAGATTGCTGCAATACATCCTAAGCACAGTCAAGACTCTATTAGGTCATTACTGCCTCGACTTCACTATTTTCAGGATGGAACATGCATTGTTCACCATCTATTTGGCCATGAAGTTGTGGAGAAGATAAAAGAAATGTACTGTGATGCATTCCTTACTGCCCACCTTGAGGTACCTGGAGAGATGTTTTCTTTGGCAATGGAAGCAAAGAGAAGGGGAATGGGTGTAGTAGGCTCCACCCAGAATATTTTGGATTTCATAAAGGATAGGATTCAGGAAGCTTTGGATAGAAATATAGATGACCATCTCCAATTTATTTTAGGAACAGAATCTGGGATGGTGACTTCAATTGTGGCAACGGTCCGTAGTTTGTTGGAGCCTGCGAAGTCCTCTTCTCAAAGAGCAAAAGTTACTGTTGAAATAGTCTTTCCAGTTTCATCAGACTCAATCTCAACAACAACCTCAAGTTTATCCTCAGGTCTTAATTCTGTCAAAGTGGGAGATATCATACTTCCTGTTGTGCCAGGAATAGCCAGCGGGGAGGGTTGTTCCATTCATGGTGGCTGTGCATCTTGTCCATACATGAAGATGAATTCTCTTAGCTCACTCCTGAAAGTTAGCCATCACCTACCCGATGAAGAAAATATCCTTTCAGCATACAAGGCAGAGCGATTTAAGTTGCAAACACCAAATGGCAAATCAGTGGCAGATGTTGGATGTGAACCTATTTTGCACATGAGGAACTTCCAGAGAAGCTCGTTGATCAGATTCTTCGTCCCCAACACAGTTGAAGTTCAGTGTGATAAACTTGAGAAATAATGTGATGTGAAGAAGACAGAAATCTGTGCTGCTGTTTGGTGAGCAATTCCAAGTTGCAACTACAGCAAAAGTTAGGTCCGTGCAAGGCCTTTGCTTATAGCATGGTAATCGTTGATACAACCGGATTTTGTTGTATGATAGTTTCCCTTCGCATAGGGAACTTCTAATTTATTTAGATACGATGACATTATTTATAGTTCGATATCAATATAGAGAAATGAATGAAATAGC
>Glyma17g13410.1 sequence type=CDS gene model=Glyma17g13410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGCATGACATACCAATCAAAGTCCAAGGATGGTGAAGAAATAGCTTTCGTGCAGGCGAAATATCTGTTCCCTAATGAGTTAAAAGTTGATGAACTAGTCAATGTGCTGAAGGAGAAGAAAATTGGTGTTGTTGCACACTTTTACATGGATCCCGAGGTCCAAGGCATTTTAACTGCTGCTCAAAAGCAGTGGCCACATATCCATTTATCTGATTCACTGGTCATGGCAGATTCAGCAGTCAAAATGGCAAAAGCTGGATGCCAATTCATAACAGTTCTAGGTGTCGATTTTATGTCAGAAAATGTTGGCGTGTATAGGATGTCAAATAAGCAAATTGGCTGTTCTCTGGCTGATGCTGCAGCTACTCCTACTTACATGGAATATCTTGCGGCTGCTTCTAGGTCTACTTCTTTGCATGTCATATACATTAACACTAAGTTAGAGACAAAGGCATATGCTCATGAGCTTGTGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAGGCATTTGCTCAAGTTCCAGATTTTAGCATATTTTATGGACCTGATTCTTACATGGGTGCAAATATCAAAGATTTGTTCCAACAAATGACAAAAATGACTGATGAAGAGATTGCTGCAATACATCCTAAGCACAGTCAAGACTCTATTAGGTCATTACTGCCTCGACTTCACTATTTTCAGGATGGAACATGCATTGTTCACCATCTATTTGGCCATGAAGTTGTGGAGAAGATAAAAGAAATGTACTGTGATGCATTCCTTACTGCCCACCTTGAGGTACCTGGAGAGATGTTTTCTTTGGCAATGGAAGCAAAGAGAAGGGGAATGGGTGTAGTAGGCTCCACCCAGAATATTTTGGATTTCATAAAGGATAGGATTCAGGAAGCTTTGGATAGAAATATAGATGACCATCTCCAATTTATTTTAGGAACAGAATCTGGGATGGTGACTTCAATTGTGGCAACGGTCCGTAGTTTGTTGGAGCCTGCGAAGTCCTCTTCTCAAAGAGCAAAAGTTACTGTTGAAATAGTCTTTCCAGTTTCATCAGACTCAATCTCAACAACAACCTCAAGTTTATCCTCAGGTCTTAATTCTGTCAAAGTGGGAGATATCATACTTCCTGTTGTGCCAGGAATAGCCAGCGGGGAGGGTTGTTCCATTCATGGTGGCTGTGCATCTTGTCCATACATGAAGATGAATTCTCTTAGCTCACTCCTGAAAGTTAGCCATCACCTACCCGATGAAGAAAATATCCTTTCAGCATACAAGGCAGAGCGATTTAAGTTGCAAACACCAAATGGCAAATCAGTGGCAGATGTTGGATGTGAACCTATTTTGCACATGAGGAACTTCCAGAGAAGCTCGTTGATCAGATTCTTCGTCCCCAACACAGTTGAAGTTCAGTGTGATAAACTTGAGAAATAA >Glyma17g13410.2 sequence type=CDS gene model=Glyma17g13410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAAATAAGCAAATTGGCTGTTCTCTGGCTGATGCTGCAGCTACTCCTACTTACATGGAATATCTTGCGGCTGCTTCTAGGTCTACTTCTTTGCATGTCATATACATTAACACTAAGTTAGAGACAAAGGCATATGCTCATGAGCTTGTGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAGGCATTTGCTCAAGTTCCAGATTTTAGCATATTTTATGGACCTGATTCTTACATGGGTGCAAATATCAAAGATTTGTTCCAACAAATGACAAAAATGACTGATGAAGAGATTGCTGCAATACATCCTAAGCACAGTCAAGACTCTATTAGGTCATTACTGCCTCGACTTCACTATTTTCAGGATGGAACATGCATTGTTCACCATCTATTTGGCCATGAAGTTGTGGAGAAGATAAAAGAAATGTACTGTGATGCATTCCTTACTGCCCACCTTGAGGTACCTGGAGAGATGTTTTCTTTGGCAATGGAAGCAAAGAGAAGGGGAATGGGTGTAGTAGGCTCCACCCAGAATATTTTGGATTTCATAAAGGATAGGATTCAGGAAGCTTTGGATAGAAATATAGATGACCATCTCCAATTTATTTTAGGAACAGAATCTGGGATGGTGACTTCAATTGTGGCAACGGTCCGTAGTTTGTTGGAGCCTGCGAAGTCCTCTTCTCAAAGAGCAAAAGTTACTGTTGAAATAGTCTTTCCAGTTTCATCAGACTCAATCTCAACAACAACCTCAAGTTTATCCTCAGGTCTTAATTCTGTCAAAGTGGGAGATATCATACTTCCTGTTGTGCCAGGAATAGCCAGCGGGGAGGGTTGTTCCATTCATGGTGGCTGTGCATCTTGTCCATACATGAAGATGAATTCTCTTAGCTCACTCCTGAAAGTTAGCCATCACCTACCCGATGAAGAAAATATCCTTTCAGCATACAAGGCAGAGCGATTTAAGTTGCAAACACCAAATGGCAAATCAGTGGCAGATGTTGGATGTGAACCTATTTTGCACATGAGGAACTTCCAGAGAAGCTCGTTGATCAGATTCTTCGTCCCCAACACAGTTGAAGTTCAGTGTGATAAACTTGAGAAATAA
>Glyma17g13410.1 sequence type=predicted peptide gene model=Glyma17g13410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MCMTYQSKSKDGEEIAFVQAKYLFPNELKVDELVNVLKEKKIGVVAHFYMDPEVQGILTAAQKQWPHIHLSDSLVMADSAVKMAKAGCQFITVLGVDFMSENVGVYRMSNKQIGCSLADAAATPTYMEYLAAASRSTSLHVIYINTKLETKAYAHELVPTITCTSSNVVQTILQAFAQVPDFSIFYGPDSYMGANIKDLFQQMTKMTDEEIAAIHPKHSQDSIRSLLPRLHYFQDGTCIVHHLFGHEVVEKIKEMYCDAFLTAHLEVPGEMFSLAMEAKRRGMGVVGSTQNILDFIKDRIQEALDRNIDDHLQFILGTESGMVTSIVATVRSLLEPAKSSSQRAKVTVEIVFPVSSDSISTTTSSLSSGLNSVKVGDIILPVVPGIASGEGCSIHGGCASCPYMKMNSLSSLLKVSHHLPDEENILSAYKAERFKLQTPNGKSVADVGCEPILHMRNFQRSSLIRFFVPNTVEVQCDKLEK* >Glyma17g13410.2 sequence type=predicted peptide gene model=Glyma17g13410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSNKQIGCSLADAAATPTYMEYLAAASRSTSLHVIYINTKLETKAYAHELVPTITCTSSNVVQTILQAFAQVPDFSIFYGPDSYMGANIKDLFQQMTKMTDEEIAAIHPKHSQDSIRSLLPRLHYFQDGTCIVHHLFGHEVVEKIKEMYCDAFLTAHLEVPGEMFSLAMEAKRRGMGVVGSTQNILDFIKDRIQEALDRNIDDHLQFILGTESGMVTSIVATVRSLLEPAKSSSQRAKVTVEIVFPVSSDSISTTTSSLSSGLNSVKVGDIILPVVPGIASGEGCSIHGGCASCPYMKMNSLSSLLKVSHHLPDEENILSAYKAERFKLQTPNGKSVADVGCEPILHMRNFQRSSLIRFFVPNTVEVQCDKLEK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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