Glyma17g13380 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g13380

Feature Type:	gene_model
Chromosome:	Gm17
Start:	10229744
stop:	10231783
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g13380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G12690	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF868) \| chr4:7480896-7481753 FORWARD LENGTH=285	SoyBase	E_val: 1.00E-66	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05910	PFAM	Plant protein of unknown function (DUF868)	JGI		ISS
UniRef100_B9SVM2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9SVM2_RICCO	SoyBase	E_val: 2.00E-113	ISS
UniRef100_UPI000233E501	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E501 related cluster n=1 Tax=unknown RepID=UPI000233E501	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g13380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g13380

Paralog	Evidence	Comments
Glyma05g02680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g13380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g124600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g13380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g13380

Limit To All Plant Sequences

>Glyma17g13380.1   sequence type=CDS   gene model=Glyma17g13380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCAAGACTCAATTGGGATCCCTGCTTGCTTTTCTTCTTCAGCAGAGAAGCAGCATAGCCACCACGATCATGATCATGGAGCTGTGACCCGTTCTGGTCAGAGCGTGTACATGTCTGTGTATAGAACAAAGGTTGCTGATCACTGCCGTTTGATCACCATTACATGGTGCAAAAACCTCTTGCTTCATGGGCTTTCGGTGTCAGTGGAAGGCCCAGAAGGAGAAGAACAGTACTACACCTGCAAGGTCGAGCTGAAGCCATGGTACTTTTGGAGGAAACAAGGTTCCAAGCGCTTCATAGTAGATGGCAAAGCCGTTGACATTTTCTGGGACCTTAAAGCTGCAAAATTTAACGGAGAAACAGAACCAACCTCGGAGTACTATGTGGCAGTGGTTTGTGATGAAGAGGTTGTTCTTCTTCTCGGTGATCTAAAGAAAGAGGCATACCGAAGGACGGGGTGTAGGCCAGCACTCATTGACCCCATTTTGGTTTCAAAGAAAGAACACATTTTTGGCAAGAAGAAGTTCTCCACTAGAGCCAAGTTTCACGAGAAGGGTAGGTGGCATGAGATTTCGATTGAGTGCAAGAACAAGGGAAATAATAATTATAATGTGGATTCTTTAAATGGGGTTCAGCCAGAGATGGAGATAAGGATTGATGGGCACTTGGTGATTCATGTGAAGCACTTGCAATGGAAGTTTAGAGGCAACGAATCAATTCATCTCAGCAAAATGAGAGTAGAGATTGAGATTGGGTTTGGATTGAGAAAGCAAGTGGGGCCAAACAGTGGCTTTGGGAGTTAG

Predicted protein sequences of Glyma17g13380

Limit To All Plant Sequences

>Glyma17g13380.1   sequence type=predicted peptide   gene model=Glyma17g13380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMQDSIGIPACFSSSAEKQHSHHDHDHGAVTRSGQSVYMSVYRTKVADHCRLITITWCKNLLLHGLSVSVEGPEGEEQYYTCKVELKPWYFWRKQGSKRFIVDGKAVDIFWDLKAAKFNGETEPTSEYYVAVVCDEEVVLLLGDLKKEAYRRTGCRPALIDPILVSKKEHIFGKKKFSTRAKFHEKGRWHEISIECKNKGNNNYNVDSLNGVQPEMEIRIDGHLVIHVKHLQWKFRGNESIHLSKMRVEIEIGFGLRKQVGPNSGFGS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain