Glyma17g13280 - SoyBase

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Report for Sequence Feature Glyma17g13280

Feature Type:	gene_model
Chromosome:	Gm17
Start:	10165899
stop:	10172722
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g13280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68710	AT	Annotation by Michelle Graham. TAIR10: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein \| chr1:25793498-25797975 REVERSE LENGTH=1200	SoyBase	E_val: 0	ISS
GO:0006812	GO-bp	Annotation by Michelle Graham. GO Biological Process: cation transport	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0015914	GO-bp	Annotation by Michelle Graham. GO Biological Process: phospholipid transport	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004012	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipid-translocating ATPase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0015662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG0206	KOG	P-type ATPase	JGI		ISS
PTHR24092	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24092:SF18	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00122	PFAM	E1-E2 ATPase	JGI		ISS
PF00702	PFAM	haloacid dehalogenase-like hydrolase	JGI		ISS
UniRef100_G7JT17	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phospholipid-transporting ATPase n=1 Tax=Medicago truncatula RepID=G7JT17_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MUI4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUI4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g13280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g13280

Paralog	Evidence	Comments
Glyma05g07730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g13280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g123800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g13280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g13280

Limit To All Plant Sequences

>Glyma17g13280.1   sequence type=CDS   gene model=Glyma17g13280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGTGGGAGAAGGAGGAGGCACCACTTCGGCAGAATCCATGCATTCACGTGTGGTAGAGCTTCTATGAAAGAGGAGCATTCACTAATAGGAGGCCCTGGCTTCTCAAGGAAAGTCTATTGCAATGACCCTGAACGTGCCACAGCGAGTCTTCTAAACTATGGTGACAATTATGTCAGAACAACTAAGTATACATTGGCCACGTTCCTCCCCAAGTCCCTGTTTGAGCAGTTCAGGAGGGTTGCCAATTTCTACTTCCTTGTTTGTGCAGTTTTGTCTTTCTTTCCGGTGTCCCCTTACTCAGGCATCAGTAATGTTGTCCCTCTACTGGTTGTGGTTGCTGCCACAATGGTCAAAGAGTTCATTGAGGATTTTAGGAGGAAAAAACAGGATATAGAGATGAATAACAGAAAAGTTAAACTGCATCGTGGAGGTGGTGTTTTTGACTATTCTAAATGGAGGGATTTGAAAGTAGGAGATGTAGTGAGGGTGGAAAAAGATGAATTTTTTCCTGCTGATCTCATCTTACTTGCATCAAACTATGATGATGCAATTTGCTATGTTGAGACCATGAATCTTGATGGAGAGACAAATCTGAAGCTGAAACAAGCACCCGAAGCAACTTCAAAGTTGCAAGAAGACTCGAACGTTCAAAATTTCAGGGCTGTCATCAAATGTGAAGACCCAAATGCTAATCTGTACACATTTGTTGGTAGTATGGAGCTCGGGGATCAACAATACCCTCTTGCACCTCAACAGCTACTGCTTAGGGACTCTAAGCTGAGGAACACAGATTTTGTTTATGGCGTGGTAATATTTACTGGACATGATACAAAGGTTATGCAGAATGCAACAGATCCTCCATCCAAGAGAAGCAAAATTGAGAAAAGGATGGATAAGATTATCTACTGCCTCTTCTTTGTACTCATTTTGATTTCTTTCATTGGGTCCATATTCTTTGGGATTGCAACAAATGATGACCTTGAAAATGGAAGAATGAAGAGATGGTACCTTAGACCAGATGATACCGAAATTTACTATGATCCAAATGAACCAGTAGCTGCAGCAATTCTGCATTTCTTCACTGCACTTATGTTGTATAGTTACTTGATTCCAATTTCCTTATATGTATCCATTGAAATTGTAAAGGTTCTTCAAAGCGTGTTCATCAACCAAGATGTGCACATGTATTATGAGGAAACTGACAAGCCGGCACATGCTCGTACATCAAATTTGAATGAAGAACTTGGTCAAGTTGATACTATACTTTCAGATAAGACAGGAACTTTGACTTGCAATTCTATGGAATTCATCAAGTGTTCTATAGCTGGGGTTGCTTATGGACGAGGAGTTACTGAAGTTGAGAGAGCTCTATCTAGGAGACATGAATCACATCCAGGCCAAGAGTTGAAAAAGATTAGTGAATCAAAGTCATCCATTAAAGGGTTTAACTTTATGGATGAAAGGGTCATGAATGGAAATTGGATCAAAGAACCCAATGCCAATGTAATCCAGAACTTCCTACGGTTGCTGGCTGTATGCCATACTGCAATACCTGAAGTTGATGAAGAAACTGGTAAGGTTTCATATGAAGCTGAATCACCAGATGAGGCAGCTTTTGTGATTGCAGCCAGGGAACTTGGATTTGAATTTTATGAAAGGACACATACAACTATTTCACTGCGTGAATTAGACACCATATCAGGCCAGAAAATCAACAGGTCCTACAAACTTTTGAATATATTAGAGTTTACTAGTGCGAGAAAGCGGATGTCTGTAATTGTGAAAGATGAGGAGGGGAAACTATTACTACTTAGCAAAGGGGCTGACAGTGTAATGTTTGAACAAATTGCAAAGAATGGAAGGGATTTTGAAGAGAAGACAAAGCAGCACATTGCTGAATATGCTGATTCTGGTTTGAGGACCTTGATACTTGCATATCGTGAACTTAATGATGAAGAGTACAATAAATTTAATAAAGAGTTTACAGAGGCCAAGAACTTAGTAAGTGAAGACCAGGAGCAGATTGTTGAGGGGATAATACAAAATATTGAGAAGGATTTAATTCTTCTTGGTGCTACTGCAGTTGAAGACAAACTACAAGATGGGGTTCCTGAATGCATTGACAAGCTAGCTCAGGCTGGGATTAAGCTATGGGTTTTAACTGGTGATAAAATGGAGACAGCAATTAATATTGGATTTGCTTGTAGTTTACTCAGACAAGGAATGAAACAAATTATAATTAGCTCAGATACTCCAGAAACTAAATCATTGGAGAAAATGGAGGACAAGTCTGCTGCTGAAGCGGCAATTAAGTCAAGTGTTCTTCGTCAACTAAGGGAGTCAAAGGCATTGCTTTCTACAGCAGATGAAAACTATGAGGCCTTAGCCCTGATCATTGATGGGAAGTCTCTTACTTATGCACTAGAAGATGATGTAAAGGACTTGTTTCTTGAACTTGCCATTGGCTGTGCGTCTGTTATCTGCTGTCGTTCATCTCCCAAACAGAAAGCACTTGTTACAAGACTGGTGAAGATGAGAACTGGTAGTACAACACTAGCTATTGGAGACGGGGCAAATGATGTTGGAATGCTTCAAGAAGCAGACATTGGAATTGGTATCAGTGGCGTGGAAGGAATGCAGGCAGTTATGTCAAGTGATATTGCAATAGCCCAATTTCGGTTTCTAGAGCGCTTACTTCTTGTGCATGGACATTGGTGTTACAGAAGGATCTCGTCAATGATCTGCTATTTCTTTTACAAGAATATTGCCTTCGGCTTCACTCTGTTCTTCTTTGAGATGTATGCCTCATTCTCAGGGCAAGCTGCATACAATGATTGGTTCATGTCACTATACAATGTATTCTTCACTTCACTTCCTGTAATTGCATTAGGAGTTTTTGATCAGGACGTATCTTCTAAATTATGTCTCAAGTTTCCATTATTATATCAAGAAGGCACCCAAAACATCCTATTTAGCTGGAAACGAATCATCGGTTGGGCATTGAATGGAGTTGTGACTTCTGCCATTGTATTCTTCTTTTGCATCCGTAGTATGGAATACCAGGCATTCCGTAAAGGCGGTGAAGTCATGGGGCTGGAAGTTCTTGGTGCCACCATGTACACCTGTGTTGTGTGGGTGGTGAATTGCCAAATGGCATTATCTATCAGTTACTTCACTTACATACAACATATATTCATCTGGGGAAGCATTCTATTCTGGTATATATTCCTCCTGGCATATGGAGCAATAGACCCTTCCTTCTCAACCACAGCCTATAAGGTCTTCATTGAAGCTCTTGCACCAGCCCCATCTTTCTGGATCGTAACTTTCCTCATTCTTATTGCTTCCCTCCTTCCATATTTCGTCTATGCTTCCATCCAATTGCGTTTCTTCCCTATGTATCATCAAATGATTCAGTGGATGAGAAACGACAGGCAAACAAGTGATCCAGAATACTGTAATGTGGTAAGGCAGCGATCGATAAGACACACAACAGTTGGATTCACTGCTCGTTTGGAAGCATCCAAACGTTTTGAAGCATCCAGAAGAGTTGAAGCATCCAACCCTTTTGAAGCATCCAATCATTTTGATGCATCCAAAAGACTTGAAGCATCCAAACGTTCTGAAGGGAAGTTTGAGGATAGATAA

Predicted protein sequences of Glyma17g13280

Limit To All Plant Sequences

>Glyma17g13280.1   sequence type=predicted peptide   gene model=Glyma17g13280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGGRRRRHHFGRIHAFTCGRASMKEEHSLIGGPGFSRKVYCNDPERATASLLNYGDNYVRTTKYTLATFLPKSLFEQFRRVANFYFLVCAVLSFFPVSPYSGISNVVPLLVVVAATMVKEFIEDFRRKKQDIEMNNRKVKLHRGGGVFDYSKWRDLKVGDVVRVEKDEFFPADLILLASNYDDAICYVETMNLDGETNLKLKQAPEATSKLQEDSNVQNFRAVIKCEDPNANLYTFVGSMELGDQQYPLAPQQLLLRDSKLRNTDFVYGVVIFTGHDTKVMQNATDPPSKRSKIEKRMDKIIYCLFFVLILISFIGSIFFGIATNDDLENGRMKRWYLRPDDTEIYYDPNEPVAAAILHFFTALMLYSYLIPISLYVSIEIVKVLQSVFINQDVHMYYEETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVERALSRRHESHPGQELKKISESKSSIKGFNFMDERVMNGNWIKEPNANVIQNFLRLLAVCHTAIPEVDEETGKVSYEAESPDEAAFVIAARELGFEFYERTHTTISLRELDTISGQKINRSYKLLNILEFTSARKRMSVIVKDEEGKLLLLSKGADSVMFEQIAKNGRDFEEKTKQHIAEYADSGLRTLILAYRELNDEEYNKFNKEFTEAKNLVSEDQEQIVEGIIQNIEKDLILLGATAVEDKLQDGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIISSDTPETKSLEKMEDKSAAEAAIKSSVLRQLRESKALLSTADENYEALALIIDGKSLTYALEDDVKDLFLELAIGCASVICCRSSPKQKALVTRLVKMRTGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFFEMYASFSGQAAYNDWFMSLYNVFFTSLPVIALGVFDQDVSSKLCLKFPLLYQEGTQNILFSWKRIIGWALNGVVTSAIVFFFCIRSMEYQAFRKGGEVMGLEVLGATMYTCVVWVVNCQMALSISYFTYIQHIFIWGSILFWYIFLLAYGAIDPSFSTTAYKVFIEALAPAPSFWIVTFLILIASLLPYFVYASIQLRFFPMYHQMIQWMRNDRQTSDPEYCNVVRQRSIRHTTVGFTARLEASKRFEASRRVEASNPFEASNHFDASKRLEASKRSEGKFEDR*

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