Glyma17g13180 - SoyBase

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Report for Sequence Feature Glyma17g13180

Feature Type:	gene_model
Chromosome:	Gm17
Start:	10088444
stop:	10091416
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g13180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74070	AT	Annotation by Michelle Graham. TAIR10: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein \| chr1:27851749-27852861 REVERSE LENGTH=317	SoyBase	E_val: 1.00E-104	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009543	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen	SoyBase	N/A	ISS
GO:0003755	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity	SoyBase	N/A	ISS
KOG0880	KOG	Peptidyl-prolyl cis-trans isomerase	JGI		ISS
PTHR11071	Panther	CYCLOPHILIN	JGI		ISS
PTHR11071:SF132	Panther		JGI		ISS
PF00160	PFAM	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	JGI		ISS
UniRef100_G7JRX9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase n=3 Tax=Medicago truncatula RepID=G7JRX9_MEDTR	SoyBase	E_val: 1.00E-171	ISS
UniRef100_I1MUH4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUH4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g13180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g13180

Paralog	Evidence	Comments
Glyma05g07830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g13180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g122500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g13180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g13180

Limit To All Plant Sequences

>Glyma17g13180.1   sequence type=CDS   gene model=Glyma17g13180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTACAAAACCCAAGAGTAGTGCGATATTCCGCTCAGCCATTCAATCCTCCAACTCGCATGGCAACACCATCACTTTCTCCATTCCAATTAATACCCACTTCTCCATCTTTTCCAATCCTCAAACAACAATGCAGATTCTCACGTAGAGAGCTCACCATCTTCAGCAACTCTTGCTTGCTACTACTCTTGGGTGCTCAGGCAAGAGCAGAAGAGAATTTGACTTTGGCAGAAGAAGATGTTGGTAACACAAGTAACAGCGATCAACCAGAAGAGAATCTGACTTTAGCAGAAGAAGATGTTGCTAACACAAGTAACAGTGATAAGCCAGAAGAGAATGTGGCTGTCACTCCCAGCTGCACTGAAAGAAAACCTACAAAACAAGTATTCTTAGACATATCTATTGATGGCGAACCTGTTGGTCGCGTTACTATAGGGCTCTATGGAGATGATGTCCCTGCAGGAGTTGATAGGTTTAGTAAGATTGCAAGTGGAGCTGCTGGTATTAGCTACAGAAGAAAGGAGTTTGTCAAAATAATGCCCAATTACGTTCAACATGGTGGCCTGAGATCGTATGGGGTGGATGCTGAACTTGCTTCGAAGACAGGTAGCAACTTGGGAACTAGTAGACTTGGTGAGGAATGGGAAAGGGAGTATGAGAGATGTCCTGGGACTAAAAATGTGGCCGGAAGTGTAGGCATTATTGTGAGAAACCCATCAAAACCGCCTCCAAAGTTGAAGCTTATTGCAAAACAAGGGAAGCTGGAGATTGATGAAGAAGAAGTAGGAAATGATCCCAATGGGACAGAATTTGTCATAGCTACGAAGGATTCGCCAGAATTGGATGCATCGACTCTGGTAATTGGAAGAGTAATAGGAGGGATGGAGGTTGTGCAGAGGATCGGTCTAGTTAAAACCGTACAAGAGAATACAGGATCTCCATATTTTAGGGTGGCAAAGCTAATAGGAGACAAGAGAGCTGTTGTAGCAGAAAGAGGATTCAACCGCCCTTATTCAAAGGTCATTGTTACAAATTGTGGTTTAATGGAGTAA

Predicted protein sequences of Glyma17g13180

Limit To All Plant Sequences

>Glyma17g13180.1   sequence type=predicted peptide   gene model=Glyma17g13180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQNPRVVRYSAQPFNPPTRMATPSLSPFQLIPTSPSFPILKQQCRFSRRELTIFSNSCLLLLLGAQARAEENLTLAEEDVGNTSNSDQPEENLTLAEEDVANTSNSDKPEENVAVTPSCTERKPTKQVFLDISIDGEPVGRVTIGLYGDDVPAGVDRFSKIASGAAGISYRRKEFVKIMPNYVQHGGLRSYGVDAELASKTGSNLGTSRLGEEWEREYERCPGTKNVAGSVGIIVRNPSKPPPKLKLIAKQGKLEIDEEEVGNDPNGTEFVIATKDSPELDASTLVIGRVIGGMEVVQRIGLVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVIVTNCGLME*

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