Glyma17g13141 - SoyBase

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Report for Sequence Feature Glyma17g13141

Feature Type:	gene_model
Chromosome:	Gm17
Start:	10065747
stop:	10069783
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g13141

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18560	AT	Annotation by Michelle Graham. TAIR10: BED zinc finger ;hAT family dimerisation domain \| chr1:6385614-6388005 FORWARD LENGTH=690	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
KOG1121	KOG	Tam3-transposase (Ac family)	JGI		ISS
PTHR10775	Panther	AC-LIKE TRANSPOSASE-RELATED	JGI		ISS
PTHR10775:SF9	Panther	UNCHARACTERIZED	JGI		ISS
PF05699	PFAM	hAT family dimerisation domain	JGI		ISS
UniRef100_D7SIU3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=D7SIU3_VITVI	SoyBase	E_val: 0	ISS
UniRef100_Q9FZ78	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F25I16.10 protein n=2 Tax=Arabidopsis thaliana RepID=Q9FZ78_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g13141

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g13141 not represented in the dataset	Glyma17g13141 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g13141

Paralog	Evidence	Comments
Glyma05g07875	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g13141 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g122200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g13141

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g13141

Limit To All Plant Sequences

>Glyma17g13141.2   sequence type=transcript   gene model=Glyma17g13141   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTTCTAGAAAATAACAGTAATAATAATAATTGAAAAGAAAATAGTTTCTTAGGCTCTAGCGAAGCGAAGCCGTGTTAGCAACAAAAAACTAAAAACCCCAGATCTCATCTACCTTCACTTCAGCCACGCCGCGCTCTCTCTCTCTCTCTCTCTCTCTCGGCTCAGATCCACTCCACGCCGATCTTCCTCAGCTTCAATCGTTTCTCTCTCTCTCTCTCTCTAATCGCAATTCAATTCTCCGCCAAAATTGAATTATGAGTCTCATCAACTCTCCCTCACGGACAGGTGACGGTTGGTGATGCTAATTACATGGACTGGGGTGGTGCTGGTGCTGGTCTTAACAATCACTACAGAACTACTTACAAAGACGACCAAAAATCCATGATGGAGGTGGCACTCATTTCAAACATGGATCCTGTAAATATTGGGCTGGGCTGTTCAGATAAGCCAGCTCCTGTTACTTCACTGAAGCCAAGAAAGAAAACAATGACATCAGTGTATTTGAAGTTCTTTGAGACAGCTGCTGATGGTAAGACTCGGAGATGCAAGTTTTGTGGACAGAGCTATTCCATTGCAACCGCCACAGGCAATTTGGGAAGGCATCTTGCTAATCGTCATCCAGGTTATGACAAGTCAGGGGAAGCTGTCAGCAATGCAGCAGCACGACCTGTCACTGTGGTTAAGAAGTCCCAGCCTCATGGAAAAGCAAACCAGGTGGATTATGATCATCTAAATTGGTTGCTCATTAGGTGGCTTGTTTTAGCTTCTCTCCCTCCTTCAACTCTGGAGGAGAAGTGGCTCGTGAATTCCTACAAGTTTCTAAATCCATCAATACAACTGTGGCCAAGTGACAAGTATAGAACTGTACTTGATGAAGTTTTCAGAAGCATGAGGGAAGATGTAAGAGCGTTGTTGGAGCAGGTTTCTTCCAAAGTATCCATTACACTTGATTTCTGGACCTCCTTTGAACAGATCTACTATATGAGTGTAACATGTCAGTGGATCGACGAAAACTGGTGCTTCCAGAAGTTGCTTCTTGATATCTGTCGCATACCCTATCCATGTGGGGGTGCAGAGATCTATCGTTCCCTCATAAAAGTTCTTAAATTTTACAATATTGAAAACAGAATCCTGTCCTGTACCCATGATAATAGTACAAGTGCCATGCATGCCTGCCATACTCTGAAAGAGGACTTGGATGGTCAGAAAATAGGGCCGTTCTGTTATATTCCCTGTGCTGCTCGAACTTTGAATGCGATAATAGATGATGGGTTGAGATCCGCAAAACAAGTCATTTCTAAGATACGGGAGTTTGCAATAGAGTTAAACGCCTCACCAGTGATCTCTGAGGATTTTATTCAATTATCCACAGCTTATCAAGAAGGTATTTGGAAATTTCCTCTTGATGTTTCAGCAAGGTGGAGTGGAAACTACCAAATGCTTGATCTTGTTCGCAAGGCAGGTAAATCAGTGGATGCTGTTATTCGTAAATACGAGGAAGTGTTAGGCAGTAGGATGCTGCTGGGATCTTCTGACAAAAGTGCAGTTAGCATCATGCATCAATATCTTGAACCATTTTACAAAACCACAAACAACATCTGCACAAGTAAGGTGCCAATGGTTGGGCTTGTCCTTTTCTTCGTGGATCACATTTCAGAAACAATTACTTCCTTCAGAGAATCACGGCTCAGCCCAGAATGGCTAAAAAATGCTGCAGAAGAAATGGCTAAAAAAGCCAGAAATTATATTAATCAAGTTTGCAACATATTTACTTATATGACAGCAATTCTTGATCCTCGAATAAAGGGAGACCTGATCCCTGATAGTTTAAACTCAGAAAACTTTCTGGATGAAGCAAGAACCCATTTTATAAGAAATTATTCAGCCAGCCATTTCTCATCCATGAGTTCTGGATACAATGCTCAAGAAATTGAAGATGGAGGAAGTGTTTCCTTTGCTGAGGAAATAGCACGCAAGAAGCGAAGGACAAGCATGAGCTCTGCCACTGATGAGCTTACGCAGTACCTATCAGAGGCTCCAGCTCCAATACCAACAGATGTCTTAGAGTGGTGGAAGGTCAACAGTACACGCTACCCTCGACTATCTGTGATGGCTAGAGATTTCCTGGCTGTGCAGGCAACTTCAGTTGTGCCTGAAGAACTTTTCTGTGGCAAGGGTGATGAAATTGACAAGCAAAGAATCTGTATGTCACATGATAGCACACAAGCTATTCTTTGTATCAAGTCATGGATTCAGGTTGGCATCAAGTTTAAGTTTAAATCAACTGAGATAGATTATGAGCGGTTGATGGAATTGGCAGCTGCAGCTGCTGCAACAGACAATAGTCCTTCAAGTTCTGACAAGAAGCAAAGATAGTGATAGAAGATGGTGGCACTAAATAATCAACAGGCATCGTTACTGTCACTGTTAGATTATATCTTGACTTCGGCCCATTGCCACTTCAACTTAGAAGGGGTAACTGGTGCGTGTTTTGTTCTTAAGTACTTGTTGTATCATATTAATATAATTATGTTGTACAGTTCTGAATTCTGGAAATTGCTAACCAGAGAAAAATCAAATATGCAACTTGACGATGGAACTCTCCCCATTTTGTGTCTGCTTGATTTGTGTCCACAGTCCACACCAAGAAAACGTATGTTTGTGCTACCGTTGAAACTGGGGCTGCATTATTAAACTTACCGAGAAGGCTAAGGATTTTAAAGCAGTGCCCTTTCACTTTGCAAAAATGAAACAAAAAATGTCCCTTTATTATTATTGTTTGTTTGTTTGGATGCAGCACCATAACTGAAAAGACACAATATGTGAAAAAAAATGACAGTTAAATAGTAA

Coding sequences of Glyma17g13141

Limit To All Plant Sequences

>Glyma17g13141.1   sequence type=CDS   gene model=Glyma17g13141   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCTCATCAACTCTCCCTCACGGGTGACGGTTGGTGATGCTAATTACATGGACTGGGGTGGTGCTGGTGCTGGTCTTAACAATCACTACAGAACTACTTACAAAGACGACCAAAAATCCATGATGGAGGTGGCACTCATTTCAAACATGGATCCTGTAAATATTGGGCTGGGCTGTTCAGATAAGCCAGCTCCTGTTACTTCACTGAAGCCAAGAAAGAAAACAATGACATCAGTGTATTTGAAGTTCTTTGAGACAGCTGCTGATGGTAAGACTCGGAGATGCAAGTTTTGTGGACAGAGCTATTCCATTGCAACCGCCACAGGCAATTTGGGAAGGCATCTTGCTAATCGTCATCCAGGTTATGACAAGTCAGGGGAAGCTGTCAGCAATGCAGCAGCACGACCTGTCACTGTGGTTAAGAAGTCCCAGCCTCATGGAAAAGCAAACCAGGTGGATTATGATCATCTAAATTGGTTGCTCATTAGGTGGCTTGTTTTAGCTTCTCTCCCTCCTTCAACTCTGGAGGAGAAGTGGCTCGTGAATTCCTACAAGTTTCTAAATCCATCAATACAACTGTGGCCAAGTGACAAGTATAGAACTGTACTTGATGAAGTTTTCAGAAGCATGAGGGAAGATGTAAGAGCGTTGTTGGAGCAGGTTTCTTCCAAAGTATCCATTACACTTGATTTCTGGACCTCCTTTGAACAGATCTACTATATGAGTGTAACATGTCAGTGGATCGACGAAAACTGGTGCTTCCAGAAGTTGCTTCTTGATATCTGTCGCATACCCTATCCATGTGGGGGTGCAGAGATCTATCGTTCCCTCATAAAAGTTCTTAAATTTTACAATATTGAAAACAGAATCCTGTCCTGTACCCATGATAATAGTACAAGTGCCATGCATGCCTGCCATACTCTGAAAGAGGACTTGGATGGTCAGAAAATAGGGCCGTTCTGTTATATTCCCTGTGCTGCTCGAACTTTGAATGCGATAATAGATGATGGGTTGAGATCCGCAAAACAAGTCATTTCTAAGATACGGGAGTTTGCAATAGAGTTAAACGCCTCACCAGTGATCTCTGAGGATTTTATTCAATTATCCACAGCTTATCAAGAAGGTATTTGGAAATTTCCTCTTGATGTTTCAGCAAGGTGGAGTGGAAACTACCAAATGCTTGATCTTGTTCGCAAGGCAGGTAAATCAGTGGATGCTGTTATTCGTAAATACGAGGAAGTGTTAGGCAGTAGGATGCTGCTGGGATCTTCTGACAAAAGTGCAGTTAGCATCATGCATCAATATCTTGAACCATTTTACAAAACCACAAACAACATCTGCACAAGTAAGGTGCCAATGGTTGGGCTTGTCCTTTTCTTCGTGGATCACATTTCAGAAACAATTACTTCCTTCAGAGAATCACGGCTCAGCCCAGAATGGCTAAAAAATGCTGCAGAAGAAATGGCTAAAAAAGCCAGAAATTATATTAATCAAGTTTGCAACATATTTACTTATATGACAGCAATTCTTGATCCTCGAATAAAGGGAGACCTGATCCCTGATAGTTTAAACTCAGAAAACTTTCTGGATGAAGCAAGAACCCATTTTATAAGAAATTATTCAGCCAGCCATTTCTCATCCATGAGTTCTGGATACAATGCTCAAGAAATTGAAGATGGAGGAAGTGTTTCCTTTGCTGAGGAAATAGCACGCAAGAAGCGAAGGACAAGCATGAGCTCTGCCACTGATGAGCTTACGCAGTACCTATCAGAGGCTCCAGCTCCAATACCAACAGATGTCTTAGAGTGGTGGAAGGTCAACAGTACACGCTACCCTCGACTATCTGTGATGGCTAGAGATTTCCTGGCTGTGCAGGCAACTTCAGTTGTGCCTGAAGAACTTTTCTGTGGCAAGGGTGATGAAATTGACAAGCAAAGAATCTGTATGTCACATGATAGCACACAAGCTATTCTTTGTATCAAGTCATGGATTCAGGTTGGCATCAAGTTTAAGTTTAAATCAACTGAGATAGATTATGAGCGGTTGATGGAATTGGCAGCTGCAGCTGCTGCAACAGACAATAGTCCTTCAAGTTCTGACAAGAAGCAAAGATAG

>Glyma17g13141.2   sequence type=CDS   gene model=Glyma17g13141   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTGGGGTGGTGCTGGTGCTGGTCTTAACAATCACTACAGAACTACTTACAAAGACGACCAAAAATCCATGATGGAGGTGGCACTCATTTCAAACATGGATCCTGTAAATATTGGGCTGGGCTGTTCAGATAAGCCAGCTCCTGTTACTTCACTGAAGCCAAGAAAGAAAACAATGACATCAGTGTATTTGAAGTTCTTTGAGACAGCTGCTGATGGTAAGACTCGGAGATGCAAGTTTTGTGGACAGAGCTATTCCATTGCAACCGCCACAGGCAATTTGGGAAGGCATCTTGCTAATCGTCATCCAGGTTATGACAAGTCAGGGGAAGCTGTCAGCAATGCAGCAGCACGACCTGTCACTGTGGTTAAGAAGTCCCAGCCTCATGGAAAAGCAAACCAGGTGGATTATGATCATCTAAATTGGTTGCTCATTAGGTGGCTTGTTTTAGCTTCTCTCCCTCCTTCAACTCTGGAGGAGAAGTGGCTCGTGAATTCCTACAAGTTTCTAAATCCATCAATACAACTGTGGCCAAGTGACAAGTATAGAACTGTACTTGATGAAGTTTTCAGAAGCATGAGGGAAGATGTAAGAGCGTTGTTGGAGCAGGTTTCTTCCAAAGTATCCATTACACTTGATTTCTGGACCTCCTTTGAACAGATCTACTATATGAGTGTAACATGTCAGTGGATCGACGAAAACTGGTGCTTCCAGAAGTTGCTTCTTGATATCTGTCGCATACCCTATCCATGTGGGGGTGCAGAGATCTATCGTTCCCTCATAAAAGTTCTTAAATTTTACAATATTGAAAACAGAATCCTGTCCTGTACCCATGATAATAGTACAAGTGCCATGCATGCCTGCCATACTCTGAAAGAGGACTTGGATGGTCAGAAAATAGGGCCGTTCTGTTATATTCCCTGTGCTGCTCGAACTTTGAATGCGATAATAGATGATGGGTTGAGATCCGCAAAACAAGTCATTTCTAAGATACGGGAGTTTGCAATAGAGTTAAACGCCTCACCAGTGATCTCTGAGGATTTTATTCAATTATCCACAGCTTATCAAGAAGGTATTTGGAAATTTCCTCTTGATGTTTCAGCAAGGTGGAGTGGAAACTACCAAATGCTTGATCTTGTTCGCAAGGCAGGTAAATCAGTGGATGCTGTTATTCGTAAATACGAGGAAGTGTTAGGCAGTAGGATGCTGCTGGGATCTTCTGACAAAAGTGCAGTTAGCATCATGCATCAATATCTTGAACCATTTTACAAAACCACAAACAACATCTGCACAAGTAAGGTGCCAATGGTTGGGCTTGTCCTTTTCTTCGTGGATCACATTTCAGAAACAATTACTTCCTTCAGAGAATCACGGCTCAGCCCAGAATGGCTAAAAAATGCTGCAGAAGAAATGGCTAAAAAAGCCAGAAATTATATTAATCAAGTTTGCAACATATTTACTTATATGACAGCAATTCTTGATCCTCGAATAAAGGGAGACCTGATCCCTGATAGTTTAAACTCAGAAAACTTTCTGGATGAAGCAAGAACCCATTTTATAAGAAATTATTCAGCCAGCCATTTCTCATCCATGAGTTCTGGATACAATGCTCAAGAAATTGAAGATGGAGGAAGTGTTTCCTTTGCTGAGGAAATAGCACGCAAGAAGCGAAGGACAAGCATGAGCTCTGCCACTGATGAGCTTACGCAGTACCTATCAGAGGCTCCAGCTCCAATACCAACAGATGTCTTAGAGTGGTGGAAGGTCAACAGTACACGCTACCCTCGACTATCTGTGATGGCTAGAGATTTCCTGGCTGTGCAGGCAACTTCAGTTGTGCCTGAAGAACTTTTCTGTGGCAAGGGTGATGAAATTGACAAGCAAAGAATCTGTATGTCACATGATAGCACACAAGCTATTCTTTGTATCAAGTCATGGATTCAGGTTGGCATCAAGTTTAAGTTTAAATCAACTGAGATAGATTATGAGCGGTTGATGGAATTGGCAGCTGCAGCTGCTGCAACAGACAATAGTCCTTCAAGTTCTGACAAGAAGCAAAGATAG

Predicted protein sequences of Glyma17g13141

Limit To All Plant Sequences

>Glyma17g13141.1   sequence type=predicted peptide   gene model=Glyma17g13141   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLINSPSRVTVGDANYMDWGGAGAGLNNHYRTTYKDDQKSMMEVALISNMDPVNIGLGCSDKPAPVTSLKPRKKTMTSVYLKFFETAADGKTRRCKFCGQSYSIATATGNLGRHLANRHPGYDKSGEAVSNAAARPVTVVKKSQPHGKANQVDYDHLNWLLIRWLVLASLPPSTLEEKWLVNSYKFLNPSIQLWPSDKYRTVLDEVFRSMREDVRALLEQVSSKVSITLDFWTSFEQIYYMSVTCQWIDENWCFQKLLLDICRIPYPCGGAEIYRSLIKVLKFYNIENRILSCTHDNSTSAMHACHTLKEDLDGQKIGPFCYIPCAARTLNAIIDDGLRSAKQVISKIREFAIELNASPVISEDFIQLSTAYQEGIWKFPLDVSARWSGNYQMLDLVRKAGKSVDAVIRKYEEVLGSRMLLGSSDKSAVSIMHQYLEPFYKTTNNICTSKVPMVGLVLFFVDHISETITSFRESRLSPEWLKNAAEEMAKKARNYINQVCNIFTYMTAILDPRIKGDLIPDSLNSENFLDEARTHFIRNYSASHFSSMSSGYNAQEIEDGGSVSFAEEIARKKRRTSMSSATDELTQYLSEAPAPIPTDVLEWWKVNSTRYPRLSVMARDFLAVQATSVVPEELFCGKGDEIDKQRICMSHDSTQAILCIKSWIQVGIKFKFKSTEIDYERLMELAAAAAATDNSPSSSDKKQR*

>Glyma17g13141.2   sequence type=predicted peptide   gene model=Glyma17g13141   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDWGGAGAGLNNHYRTTYKDDQKSMMEVALISNMDPVNIGLGCSDKPAPVTSLKPRKKTMTSVYLKFFETAADGKTRRCKFCGQSYSIATATGNLGRHLANRHPGYDKSGEAVSNAAARPVTVVKKSQPHGKANQVDYDHLNWLLIRWLVLASLPPSTLEEKWLVNSYKFLNPSIQLWPSDKYRTVLDEVFRSMREDVRALLEQVSSKVSITLDFWTSFEQIYYMSVTCQWIDENWCFQKLLLDICRIPYPCGGAEIYRSLIKVLKFYNIENRILSCTHDNSTSAMHACHTLKEDLDGQKIGPFCYIPCAARTLNAIIDDGLRSAKQVISKIREFAIELNASPVISEDFIQLSTAYQEGIWKFPLDVSARWSGNYQMLDLVRKAGKSVDAVIRKYEEVLGSRMLLGSSDKSAVSIMHQYLEPFYKTTNNICTSKVPMVGLVLFFVDHISETITSFRESRLSPEWLKNAAEEMAKKARNYINQVCNIFTYMTAILDPRIKGDLIPDSLNSENFLDEARTHFIRNYSASHFSSMSSGYNAQEIEDGGSVSFAEEIARKKRRTSMSSATDELTQYLSEAPAPIPTDVLEWWKVNSTRYPRLSVMARDFLAVQATSVVPEELFCGKGDEIDKQRICMSHDSTQAILCIKSWIQVGIKFKFKSTEIDYERLMELAAAAAATDNSPSSSDKKQR*

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