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Report for Sequence Feature Glyma17g13130

Feature Type:gene_model
Chromosome:Gm17
Start:10061037
stop:10065411
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g13130
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G38640AT Annotation by Michelle Graham. TAIR10: NagB/RpiA/CoA transferase-like superfamily protein | chr5:15468020-15470674 REVERSE LENGTH=642 SoyBaseE_val: 0ISS
GO:0006413GO-bp Annotation by Michelle Graham. GO Biological Process: translational initiation SoyBaseN/AISS
GO:0044237GO-bp Annotation by Michelle Graham. GO Biological Process: cellular metabolic process SoyBaseN/AISS
GO:0045947GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of translational initiation SoyBaseN/AISS
GO:0050790GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of catalytic activity SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005851GO-cc Annotation by Michelle Graham. GO Cellular Compartment: eukaryotic translation initiation factor 2B complex SoyBaseN/AISS
GO:0003743GO-mf Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity SoyBaseN/AISS
GO:0005085GO-mf Annotation by Michelle Graham. GO Molecular Function: guanyl-nucleotide exchange factor activity SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
KOG1467 KOG Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) JGI ISS
PTHR10233Panther TRANSLATION INITIATION FACTOR EIF-2B JGI ISS
PTHR10233:SF14Panther TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT DELTA JGI ISS
PF01008PFAM Initiation factor 2 subunit family JGI ISS
UniRef100_B9RE48UniRef Annotation by Michelle Graham. Most informative UniRef hit: Translation initiation factor 2b, delta subunit, putative n=1 Tax=Ricinus communis RepID=B9RE48_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233E4F7UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E4F7 related cluster n=1 Tax=unknown RepID=UPI000233E4F7 SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g13130
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g13130 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g122100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g13130
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g13130
>Glyma17g13130.1   sequence type=CDS   gene model=Glyma17g13130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCACCACGTGTCTCTCGAGCAATCGGCGACCCCAAAATCCGCCGCGTTGGTTTCTTCGCTTCAGATTCTTCCGCCACCGATTCTCTCATGATCCCGTCGCCACGTCATCGCTCCATTCCGGTTCCGCCGACGCACCCTTCCGGAGATCGCCACGTGGCATCCGGGAGCTACGATCCCACGGAATACCCAAAACTCGCTACTGGCATTGAAAAGAGAGGGGAGGAAGAGGAAGAGAAAGAGGTTCTGCAATCAAGCTTAAAGCCGTTGAAAGCAAAAACTACCAAGGCTGAGAGACGGGCCTTGCAGGAGGCACAGAGAGCTGCTAAAGCTGCTTCTAAAGACGAGGGAAGTAAAGCAGTTGCTGAATCTGGTCGAGGCACCCCAGGTAAAAGTACAAAGCAGTCTTCACAAAAGAAAGGTGGTCCTTCCTGTGTGTCTCCAGTGGCCACTGATAAGAATGCAGGAAATCGTCCTCTGGATAAAGATAGGAAAATGGATGCTCCTTCTCCGCGAATGCAATTTGATGACAAAAGCCGATTGGAAAAGGCTAGAAGATGTGCAGTAGTCAATCCAACTGAATCTAGAAACAAAGTTGAATTATTTCAGCATTTGCCTCAGTATGAATACGGAACTCAGCTTCCTAATCTTGAATCAAAGTTTTTCCAAATTGGTTCAGTGCATCCTGCTGTATTTGAGGTTGGACTGCGTTATTCAGCAGGAGATATATCAGGGGGTAATGCTCGTTGTATTGCAATGCTAAGAGCATTTCAAGATGCCATTAGAGATTACTGCACACCACATGAAAAGGTCCTTGTTAGGGATTTAGCTTCAAAAATCAGTAGTTATGTATCTTTCTTTACTGAATGTAGACCACTTTCTATGAGCATGGGAAATGCAATTAGGTTTGTAAAGAGTCGTATTGTCAATCTGACTTTAAATCATTCGGAGTTTGAGGCAAAAACAACCCTGTGTTCTGATATTGACCGGTTCATAAATGAAAAAATAATTCTTGCTGATAAGGTGATTGTCCGACATGCTTTTACAAAGGTTAAGGATGGGGATGTTCTTCTCACATATGGATTGTCATGTGTTGTTGAGATGATTCTTTTATATGCCTATGAGCAAGGTAAAAAGTTCCGTGTGGTGGTGGTAGATTCACGACCTAGGCTTGAAGGTCAGGCCTTACTTCGTAGGCTAGTGGCTAAGGGCCTGAGTTGCACATATACTCATATAAATGCTGTTTCTTATATCATGCATGAGGTCACACGGGTTCTTCTGGGAGCTTCTGCAGTTTTGTCTAATGGAACTGTATATTCAAGGGTTGGGACTTCTTGTGTTGCAATGGTCGCTCATGCCTTTCATGTTCCTGTATTGATCTGTTGTGAAGCATATAAATTTCATGAAAGGGTGCAACTGGATTCAATATGTTCTAATGAACTAGGTGACCCAGATGCTATTGCCAGGGTTCCTGGACGAATGGATGTCAGTTATCTTAGCAATTGGGCCAGTGAAGATAATTTGAGGCTTTTGAATTTGATGTATGATGCTACTCCTTCAGATTATGTCTCGGTTATTGTGACAGATTATGGCATGCTCCCTCCTACAAGCGTGCCTGTAATAGTACGTGAATATGGACGAGAGCATTTGTTGATGTAG
Predicted protein sequences of Glyma17g13130
>Glyma17g13130.1   sequence type=predicted peptide   gene model=Glyma17g13130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAPRVSRAIGDPKIRRVGFFASDSSATDSLMIPSPRHRSIPVPPTHPSGDRHVASGSYDPTEYPKLATGIEKRGEEEEEKEVLQSSLKPLKAKTTKAERRALQEAQRAAKAASKDEGSKAVAESGRGTPGKSTKQSSQKKGGPSCVSPVATDKNAGNRPLDKDRKMDAPSPRMQFDDKSRLEKARRCAVVNPTESRNKVELFQHLPQYEYGTQLPNLESKFFQIGSVHPAVFEVGLRYSAGDISGGNARCIAMLRAFQDAIRDYCTPHEKVLVRDLASKISSYVSFFTECRPLSMSMGNAIRFVKSRIVNLTLNHSEFEAKTTLCSDIDRFINEKIILADKVIVRHAFTKVKDGDVLLTYGLSCVVEMILLYAYEQGKKFRVVVVDSRPRLEGQALLRRLVAKGLSCTYTHINAVSYIMHEVTRVLLGASAVLSNGTVYSRVGTSCVAMVAHAFHVPVLICCEAYKFHERVQLDSICSNELGDPDAIARVPGRMDVSYLSNWASEDNLRLLNLMYDATPSDYVSVIVTDYGMLPPTSVPVIVREYGREHLLM*






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