Glyma17g13100 - SoyBase

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Report for Sequence Feature Glyma17g13100

Feature Type:	gene_model
Chromosome:	Gm17
Start:	10033052
stop:	10035355
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g13100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G73965	AT	Annotation by Michelle Graham. TAIR10: CLAVATA3/ESR-RELATED 13 \| chr1:27815822-27816145 FORWARD LENGTH=107	SoyBase	E_val: 8.00E-18	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0005102	GO-mf	Annotation by Michelle Graham. GO Molecular Function: receptor binding	SoyBase	N/A	ISS
UniRef100_E9L566	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CLE20 protein n=1 Tax=Glycine max RepID=E9L566_SOYBN	SoyBase	E_val: 4.00E-77	ISS
UniRef100_E9L566	UniRef	Annotation by Michelle Graham. Best UniRef hit: CLE20 protein n=1 Tax=Glycine max RepID=E9L566_SOYBN	SoyBase	E_val: 4.00E-77	ISS

Expression Patterns of Glyma17g13100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g13100

Paralog	Evidence	Comments
Glyma05g07900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g13100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g121800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g13100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g13100

Limit To All Plant Sequences

>Glyma17g13100.1   sequence type=CDS   gene model=Glyma17g13100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCATGATCATCAGATTCCAACATCCACTAAGCTTCATTCTTTGGCTCTTCCTCTTCTTGGTACTCTTTCAATATGTCTGGTTTGGTTCCAAATCCAACAATGATAACAACGCCGTCTTCACCAACAACCAACTTCAGTTCTCTCTGTCTAGAAATAGAAGAATCTTAACAACTGGCCGAGGATTTGACTTCACCCCGTTTCTCCACCACCACCATCGTGGTCATCATCGGCGCCACCACCACCGGAGTCGCGTGCCGGAGTCAAAGGAAACCGAGATTGATCCACGTTATGGTGTTGAGAAACGCCTTGTTCCAACGGGTCCAAACCCATTGCACCATTAA

Predicted protein sequences of Glyma17g13100

Limit To All Plant Sequences

>Glyma17g13100.1   sequence type=predicted peptide   gene model=Glyma17g13100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMIIRFQHPLSFILWLFLFLVLFQYVWFGSKSNNDNNAVFTNNQLQFSLSRNRRILTTGRGFDFTPFLHHHHRGHHRRHHHRSRVPESKETEIDPRYGVEKRLVPTGPNPLHH*

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