Report for Sequence Feature Glyma17g13080
Feature Type: gene_model
Chromosome: Gm17
Start: 10002022
stop: 10016878
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g13080
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G73960 AT
Annotation by Michelle Graham. TAIR10: TBP-associated factor 2 | chr1:27805173-27814433 REVERSE LENGTH=1390
SoyBase E_val: 0 ISS
GO:0009630 GO-bp
Annotation by Michelle Graham. GO Biological Process: gravitropism
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0008237 GO-mf
Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG1932
KOG
TATA binding protein associated factor
JGI ISS
PTHR15137 Panther
TRANSCRIPTION INITIATION FACTOR TFIID
JGI ISS
PTHR15137:SF1 Panther
TBP-ASSOCIATED FACTOR 2
JGI ISS
PF01433 PFAM
Peptidase family M1
JGI ISS
UniRef100_D7KRP1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Membrane alanyl aminopeptidase n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KRP1_ARALL
SoyBase E_val: 0 ISS
UniRef100_I1MUG4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUG4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g13080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g13080
Paralog Evidence Comments
Glyma05g07926 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g13080 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g121600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g13080
Coding sequences of Glyma17g13080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g13080.1 sequence type=CDS gene model=Glyma17g13080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGAAGCCTCGCAAGCCCAAGAACAACGAAGACCCGAAGCCCGAAAACTCCGGCGCCGTAGTTCACCACCAAAAGCTATGCCTCTCCATCGACATCGACAAACGCCAAGTCCACGGGTACACTGAATTGGAGATTGCGGTGCCTGAGATTGGGATCGTAGGGTTGCACGCGGAGAATTTAGGGATTGAGAGTGTTTGTGTTGACGGCGAGCCAACGGAGTTCGAGTATTACCCGCACCATCAGCAGCAGGGGGAGGATGAGAAGAGGTTTAGCTCCGTGTGTTCTCCTAGCTCTGCTGCCGATGCTGCTGTCTCAGTGTACATGTCCGCTCTTGAGAAGGAATTGGTTCCCAATTTGCTCATTAATTGTTGCAAACCTTCCAAGGCTGAAAGTGAACAACAGCAGGAGCAACAACCCACTTCTGAGAACGGGTTTCACTCTTCGGCTGAGCCCAAGCAGAATGTGAGAACTGTTCGTATTGACTATTGGATAGAGAAGGCAGAGACAGGAATACACTTCAGAAATAATCTTCTTCATACTGATAATCAGATAAGGAGAGCAAGGTGTTGGTTCCCATGTATAGATGACAATTCACAACGATGCTGCTATGACCTGGAGTTCACAGTAGCATACAATCTTGTGGCTGTCAGTACAGGAAGCTTGCTTTATCAGGTCTTAAGCAAGGACAATCCTCCTCAGAAAACTTATGTCTATAAACTGGATGTTCCAGTTGCTGCAAGGTGGATATCTTTGGCTGTTGCCCCATTTGAAATTCTTCCTGATCACCAATTTAGCCTTATATCACATATGTGTTCTCTGCCTAATCTGTCAAAGATGCGGAATACAGTGGATTTTTTCCACAGTGCCTTCAGCTGCTATAAGGATTATCTTTCTGTAGACTTCCCATTTGACTCATATACACAAGTTTTCATAGAGCCAGAGATGGCAGTGTCTTCATTGAGTTTAGGAGCCTCTATGAGTGTATTTAGTTCTCAAGTTTTGTTTGATGAGAAGGTTATTGACCAGACTATTGATACAAGGGTAAAACTTGCATATGCTCTCGCAAGACAGTGGTTTGGTGTGTACATCACTCCTGAGGCACCAAATGATGAGTGGCTCTTGGATGGACTTGCTGGTTTCTTGACAGATTTTTTTATTAAGAAACATTTGGGAAATAATGAGGCACGGTACAGGAGATACAAGGCAAATTGTGCTGTTTGCAAAGTTGATAATGGTGGAGCGACAGCTTTGAGCTGTTCAGCTTCCTGTAAAGATTTATATGGAACTCAGTGCATTGGTTTGTATGGAAAAATAAGATCATGGAAGTCTGTGGCAGCTCTTCAGATGTTGGAAAAACAAATGGGTCCTGAATCTTTTCGTAGAATTTTGCAAACTATAGTTTCTCGTGCTCAAGATAAAACTCGTTCCATAAAGACTCTTAGTACTAAGGAGTTTCGACATTTTGCTAACAAGGTTGGGAATCTTGAACGCCCATTTCTTAAAGATTTCTTTCCTCGGTGGGTTGGTTCTTGTGGATGTCCTGTTTTAAGGATGGGGTTTTCCTATAATAAAAGGAAGAATATGGTTGAATTGGCTGTGCTGCGGGGATGTACAGCATTGCAGACTTCAAATACATCCATTCTTGATATTAATCCAGATACAGAAACTCGAGATGGAGATACTGGATGGCCTGGTATGATGAGCATCAGGGTATATGAACTTGATGGTATGTATGACCATCCAATTCTACCAATGGCTGGAGATGCATGGCAACTATTGGAAATACAATGCCACTCAAAGCTTGCTGCTAGACGCTTTCAGAAGCCCAAGAAAGGTTTAAAACTTGATGGGTCTGATGATAATGGTGATGTGCCTTCCATGGATATGCGTTCAAATACCGAGTCCCCTTTATTATGGATTAGAGCAGATCCTGATATGGAGTACCTTGCTGAGGTTCATTTTAACCAACCAGTTCAGATGTGGATCAATCAATTAGAGAAGGACAAAGATGTTATTGCTCAGGCACAAGCAATTGCAGCCCTTGAGGCATCCCCACAGCTATCATTTTCTATTGTTAATGCCCTAAATAATTTTCTCAGTGACTCCAAGGCTTTTTGGAGAGTACGGATCGAAGCGGCATTTGCATTGGCAAATTCAGCATCTGAGGAAACTGATTTTTCTGGTCTACTCCATCTGATGAAATTTTACAAGAGTCGAAGGTTTGATACTGACATTGGACTGCCAAAGCCAAACGATTTTCATGACTTTGCCGAGTATTTTGTTCTTGAGGCTATTCCACATGCTGTTGCTATGGTTAGAGCTGCTGACAAGAAAAGCCCAAGAGAGGCTATCGAGTTTGTTTTACAGCTATTGAAGTACAATGACAACAATGGGAACCCTTACTCAGATGTATTCTGGCTTGCTGCATTAGTCCAGTCAGTTGGTGAGCTTGAGTTTGGGCAACAGAGTATTCTCTTACTGTCATCACTCCTCAAACGCATTGACCGGCTTCTACAATTTGATAGTCTCATGCCAAGCTACAATGGAATCTTGACTATCAGTTGTATCCGGACATTGACCCAGATTGCATTAAAGCTTTCAGGGTTCATTCCTCTTGATCGAGTTTATGGACTTGTAAAGCCTTTTCGGGACATAAAGGCATTGTGGCAAGTTCGAATTGAAGCAAGTAGAGCACTCCTTGATCTTGAATTCCACTGCAAGGGCATGGATTCAGCTTTGCTTTTATTTATCAAATACATAGAGGAGGAGCATTCCTTAAGAGGGCAGTTAAAACTAGCCACCCATGTTATGAGGCTATGTCAGATGAGAGATGGATTGAATTCAAATGACGAAATTACAAGCCAAACTCTTGTCTCTATGCTTAATTTACTGGAAGGGCGTATAGCTTTTAATAATGCCTTTCTCCGGCATTACTTGTTCTGCATATTACAAATACTTGCAAGAAGACACCCAACTCTTCATGGGATTCCCAGAGAAAATAGAATGCTGCATATGAGTCTTACAGAAGCTAGTAACTATCAAAAGAACATGCTTGCTCTTGATTCAGAAAGCAAACCTTTGGATCTGCCAAGCTCTATTGATGATCTTACACAAAATTTGGGCCCGACAATGGAGGGCTTGAGGGACGCACTTGATGAAGCTCCTAAGGACCAACCTTGTGAAGCTCCCACACAGGTGCACCTTGAAGCTCTAAAGGAAGCGTCCCTTGAGAAGCCCAAAGAGGTATTTACTGAATTTCCCCAGGAAGCACCAATTGAAGCTCCAAATGAAATTTCTAAGGAGGCTGATACTGTATCCAATAGCCATGAAAGAAAGAGACCCATTAAAATCAAGGTCAAACAATCTTCTGCCACCAGTAGGGCTGATACTGATAATCAGGTGGTTGAACGTTCTTTAGGTGGTCGTAATGAAATGGATCATGGAGCTAGCAGTTCAGTTTCTGTAGATGCACCCCAGAGGAATTTTGCTGAGACTGTTAGCATCAGTAATCACAATATTGATGAAGTTAATTCTTGGCATGATCGCGGTTCACGCATGACTGCCAGCATTGGTAGTGCAAAGTTTTTGAGTGATGGTGATGAATTGGTCAAAGAACTCCAGTGCACTGCTGATTCAAGTATAGTTTATTCACAACCTCAGCCAGAAGATCCATCATCATCCAGTATTATCCAGGATAACAATATAGATGCTGATGCACGACGATATGCCAGCCTTCAAACTCTTTCAGTTGCAAGATTTGATCCTGACGGAGAACCATTAGGTAAAGAAATTTCTGCTCGGGGGAAAGAAAAGCACAAAAGCAAGGAAAAGAAACGGAAACGGGAAAGTAATAAAGGACACCATGATGATCCAGAGTATTTGGAGCGCAAACGATTAAAGAAAGAGAAAAAACGTAGGGAAAAAGAACTGGCAAAACTTCAGAGTGATGAAGCGAAGAGATCCTCCATAGATATGTCAAGCAAGAAAGAGGAGCCTGTAGTGGACGTTGTTGCTAGACAGGTTACATCTGTTGAACCCACTGGATATGATTCTAAATTAGAAATAAAAAAGATAGATACCACCAAACCGGAGCCATCTGAAGGCACATCTGGTGCACCAAAAATTCGAATTAAAATTAAAAACCGAATGCTCAGCAAGCCCTAG
Predicted protein sequences of Glyma17g13080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g13080.1 sequence type=predicted peptide gene model=Glyma17g13080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAKPRKPKNNEDPKPENSGAVVHHQKLCLSIDIDKRQVHGYTELEIAVPEIGIVGLHAENLGIESVCVDGEPTEFEYYPHHQQQGEDEKRFSSVCSPSSAADAAVSVYMSALEKELVPNLLINCCKPSKAESEQQQEQQPTSENGFHSSAEPKQNVRTVRIDYWIEKAETGIHFRNNLLHTDNQIRRARCWFPCIDDNSQRCCYDLEFTVAYNLVAVSTGSLLYQVLSKDNPPQKTYVYKLDVPVAARWISLAVAPFEILPDHQFSLISHMCSLPNLSKMRNTVDFFHSAFSCYKDYLSVDFPFDSYTQVFIEPEMAVSSLSLGASMSVFSSQVLFDEKVIDQTIDTRVKLAYALARQWFGVYITPEAPNDEWLLDGLAGFLTDFFIKKHLGNNEARYRRYKANCAVCKVDNGGATALSCSASCKDLYGTQCIGLYGKIRSWKSVAALQMLEKQMGPESFRRILQTIVSRAQDKTRSIKTLSTKEFRHFANKVGNLERPFLKDFFPRWVGSCGCPVLRMGFSYNKRKNMVELAVLRGCTALQTSNTSILDINPDTETRDGDTGWPGMMSIRVYELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRFQKPKKGLKLDGSDDNGDVPSMDMRSNTESPLLWIRADPDMEYLAEVHFNQPVQMWINQLEKDKDVIAQAQAIAALEASPQLSFSIVNALNNFLSDSKAFWRVRIEAAFALANSASEETDFSGLLHLMKFYKSRRFDTDIGLPKPNDFHDFAEYFVLEAIPHAVAMVRAADKKSPREAIEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILLLSSLLKRIDRLLQFDSLMPSYNGILTISCIRTLTQIALKLSGFIPLDRVYGLVKPFRDIKALWQVRIEASRALLDLEFHCKGMDSALLLFIKYIEEEHSLRGQLKLATHVMRLCQMRDGLNSNDEITSQTLVSMLNLLEGRIAFNNAFLRHYLFCILQILARRHPTLHGIPRENRMLHMSLTEASNYQKNMLALDSESKPLDLPSSIDDLTQNLGPTMEGLRDALDEAPKDQPCEAPTQVHLEALKEASLEKPKEVFTEFPQEAPIEAPNEISKEADTVSNSHERKRPIKIKVKQSSATSRADTDNQVVERSLGGRNEMDHGASSSVSVDAPQRNFAETVSISNHNIDEVNSWHDRGSRMTASIGSAKFLSDGDELVKELQCTADSSIVYSQPQPEDPSSSSIIQDNNIDADARRYASLQTLSVARFDPDGEPLGKEISARGKEKHKSKEKKRKRESNKGHHDDPEYLERKRLKKEKKRREKELAKLQSDEAKRSSIDMSSKKEEPVVDVVARQVTSVEPTGYDSKLEIKKIDTTKPEPSEGTSGAPKIRIKIKNRMLSKP*