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Report for Sequence Feature Glyma17g13050

Feature Type:gene_model
Chromosome:Gm17
Start:9955084
stop:9966728
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g13050
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18524AT Annotation by Michelle Graham. TAIR10: MUTS homolog 2 | chr3:6368151-6372409 REVERSE LENGTH=937 SoyBaseE_val: 0ISS
GO:0000710GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic mismatch repair SoyBaseN/AISS
GO:0000724GO-bp Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination SoyBaseN/AISS
GO:0006200GO-bp Annotation by Michelle Graham. GO Biological Process: ATP catabolic process SoyBaseN/AISS
GO:0006270GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication initiation SoyBaseN/AISS
GO:0006275GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication SoyBaseN/AISS
GO:0006290GO-bp Annotation by Michelle Graham. GO Biological Process: pyrimidine dimer repair SoyBaseN/AISS
GO:0006298GO-bp Annotation by Michelle Graham. GO Biological Process: mismatch repair SoyBaseN/AISS
GO:0006301GO-bp Annotation by Michelle Graham. GO Biological Process: postreplication repair SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006311GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic gene conversion SoyBaseN/AISS
GO:0006346GO-bp Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing SoyBaseN/AISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0016246GO-bp Annotation by Michelle Graham. GO Biological Process: RNA interference SoyBaseN/AISS
GO:0016570GO-bp Annotation by Michelle Graham. GO Biological Process: histone modification SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0031048GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA SoyBaseN/AISS
GO:0031507GO-bp Annotation by Michelle Graham. GO Biological Process: heterochromatin assembly SoyBaseN/AISS
GO:0043570GO-bp Annotation by Michelle Graham. GO Biological Process: maintenance of DNA repeat elements SoyBaseN/AISS
GO:0045128GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of reciprocal meiotic recombination SoyBaseN/AISS
GO:0045787GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of cell cycle SoyBaseN/AISS
GO:0048449GO-bp Annotation by Michelle Graham. GO Biological Process: floral organ formation SoyBaseN/AISS
GO:0048451GO-bp Annotation by Michelle Graham. GO Biological Process: petal formation SoyBaseN/AISS
GO:0048453GO-bp Annotation by Michelle Graham. GO Biological Process: sepal formation SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0000228GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nuclear chromosome SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0032301GO-cc Annotation by Michelle Graham. GO Cellular Compartment: MutSalpha complex SoyBaseN/AISS
GO:0032302GO-cc Annotation by Michelle Graham. GO Cellular Compartment: MutSbeta complex SoyBaseN/AISS
GO:0000400GO-mf Annotation by Michelle Graham. GO Molecular Function: four-way junction DNA binding SoyBaseN/AISS
GO:0000403GO-mf Annotation by Michelle Graham. GO Molecular Function: Y-form DNA binding SoyBaseN/AISS
GO:0000404GO-mf Annotation by Michelle Graham. GO Molecular Function: loop DNA binding SoyBaseN/AISS
GO:0000406GO-mf Annotation by Michelle Graham. GO Molecular Function: double-strand/single-strand DNA junction binding SoyBaseN/AISS
GO:0003684GO-mf Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008094GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity SoyBaseN/AISS
GO:0030983GO-mf Annotation by Michelle Graham. GO Molecular Function: mismatched DNA binding SoyBaseN/AISS
GO:0032137GO-mf Annotation by Michelle Graham. GO Molecular Function: guanine/thymine mispair binding SoyBaseN/AISS
GO:0032138GO-mf Annotation by Michelle Graham. GO Molecular Function: single base insertion or deletion binding SoyBaseN/AISS
KOG0219 KOG Mismatch repair ATPase MSH2 (MutS family) JGI ISS
PTHR11361Panther DNA MISMATCH REPAIR MUTS RELATED PROTEINS JGI ISS
PTHR11361:SF33Panther MUTS HOMOLOG 2, MSH2 JGI ISS
PF00488PFAM MutS domain V JGI ISS
PF01624PFAM MutS domain I JGI ISS
PF05188PFAM MutS domain II JGI ISS
PF05190PFAM MutS family domain IV JGI ISS
PF05192PFAM MutS domain III JGI ISS
UniRef100_B9RE38UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA mismatch repair protein MSH2, putative n=1 Tax=Ricinus communis RepID=B9RE38_RICCO SoyBaseE_val: 0ISS
UniRef100_I1MUG2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUG2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g13050
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g13050 not represented in the dataset
Glyma17g13050 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g13050 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g121400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g13050
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g13050
>Glyma17g13050.1   sequence type=CDS   gene model=Glyma17g13050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAAAACTTCGACGACCTAAATAATAAACTCCCTGAGCTCAAATTAGATTCTAAGCAAGCGCAAGGGTTTCTGTCATTTTTCAAAACCCTACCTGATGATCCAAGGGCTGTACGGTTTTTTGATCGCCGGGACTATTATACTGCCCATGGTGAGAATGCTACATTCATTGCAAAGACCTATTACCACACTACTACAGCTATGCGACAACTGGGCAGTGGATCAAATGCTCTTTCCAGTGTAAGTGTCAGCAGGAACATGTTTGAAACAATTGCTCGTGATCTCCTTTTGGAGAGAACAGACCATACTCTTGAGCTCTATGAAGGTAGTGGTTCTAATTGGAGACTGGTCAAAAGTGGAACACCTGGTAATATTGGCAGTTTTGAAGATGTTCTGTTTGCTAACAGTGAAATGCAAGATTCTCCAGTTGTTGTTGCTTTGTCACTTAACTATCGGGAAAATGGGTGCACCATTGGGTTAGGATTTGTTGATCTAACTAAGAGAGTACTTGGGATGGCTGAATTCCTTGATGACAGTCACTTCACGAATGTGGAGTCAGCATTTGTTGCACTTGGGTGCAAAGAGTGCATTCTGCCTATAGAGTCTGGCAAATCTACTGAAAATAGAATGTTGTGTGATGTGTTGACTAAATGTGGTGTGATGTTAACTGAGAAAAAGAAATCTGAATTTAAAACTAGGGATCTGGTACAGGATCTTGGCAGGCTTGTTAAAGGTCCTATTGAACCAGTTCGAGATTTAGTGTCTGGATTTGAATTTGCACCTGGTGCTTTAGGGGCATTACTATCTTATGCAGAGTTACTGGCAGATGAAAGCAATTATGAAAATTATACTCTGCGTAGTTACAATCTTGACAGCTACATGAGGTTAGACTCTGCAGCCATGAGAGCACTTAATGTCCTGGAAAGCAAAACTGATGCAAACAAAAATTTCAGTTTGTTTGGTCTCATGAATAGGACTTGTACTGCTGGAATGGGAAAACGGTTATTGCACGTCTGGCTAAAACAACCATTAGTAGATGTAAAAGAAATTAATTCCAGGTTGGACATAGTTCAAGCATTTGTAGAGGACACTGCTCTTCGCCAAGATCTGAGGCAGCATCTGAAAAGAATATCAGACATTGAGCGATTGATGCACAATATTCAGAAGCGACGAGCTGGTCTGCAACATATTGTTAAACTTTATCAGTCAAGTATTAGACTACCTTACATCAAAAGTGCTTTGGAAAGATATGATGGACAATTTTCCACAATGATGAGGAGTAGGTATCTGGAACCTATTGAGTTATGGACTGATGATGAGCACCTGAACAAATTCATTGGGCTTGTAGAAGCTTCTGTTGACCTTGATCAACTGGAGAATAGGGAATACATGATTTCTCCAAGCTATGACTCTATACTAGCTAACCTAAAGGACCAACAAGAATTACTAGAGAGCCAAATACAAAACTTGCATAGACAAACTGCTGATGATCTTGATCTGCCTATGGACAAGGCATTAAAGTTAGACAAGGGCACACAATTTGGACATGTTTTCAGAATCACAAAGAAGGAAGAGCCAAAAATAAGGAAGAAGCTCAATACTCAGTTTATTATACTGGAAACCCGTAAAGATGGAGTGAAATTTACCAACACGAAGCTCAAGAAACTAGGGGACCAATATCAACAAATTCTTGAGGAGTATAAAAGTTGTCAAAAAAAGTTAGTTGATAGAGTAGTTCAAACTGCGGCAACTTTCTCTGAGGTGTTTGAATCTTTAGCTGAAATAATTTCTGAATTGGATGTATTACTGAGCTTTGCTGATTTGGCTTCTAGTTGTCCTACTCCCTACACAAGGCCTGACATCACTTCATCGGACGAAGGAGATATTACTTTAGAAGGATGCAGACACCCTTGTGTAGAGGCACAAGACTGGGTGAATTTTATACCAAATGATTGTAAGCTTGTCAGAGGAAAAACTTGGTTTCAAATAATAACAGGACCTAACATGGGTGGGAAATCAACATTTATCCGACAGGTGGGTGTTAATATTTTGATGGCACAAGTTGGTTCCTTTGTTCCTTGTGACAATGCCAGCATATCTGTCCGTGATTGCATTTTTGCCCGTGTTGGTGCTGGTGACTGTCAACTTCGTGGAGTTTCTACCTTTATGCAAGAAATGCTTGAAACTGCATCAATATTAAAGGGAGCTACTGACAAGTCCTTGATAATCATTGATGAGTTGGGACGTGGGACATCAACTTATGATGGATTTGGTTTAGCTTGGGCCATTTGTGAGCATATTGTTGAAGTAATCAAAGCACCTACTTTGTTTGCCACCCACTTTCACGAATTGACTGCATTAGCCCTTGAAAATGTAAGCAATGATTCACAGAAGCAAATTGTTGGTGTGGCAAACTATCATGTTAGTGCACATATTGACTCATCAACTCGAAAGCTAACCATGCTATACAAGGTTGAACCTGGAGCTTGTGATCAGAGTTTCGGTATTCATGTTGCCGAGTTTGCAAACTTCCCTGAAAGTGTTGTTACCCTAGCTAGAGAAAAGGCAGCAGAATTAGAAGACTTTTCTCCTTCTGCAACATCCTTAAATCATACTACACAGGAGGTAGGTTCTAAACGTAAGAGAGCATTTGAACCCGATGACATGTCTCAAGGGGCTGCAAAGGCTCGCCAATTTCTAGAAGCATTTGTTGCTTTGCCTCTAGAAACCATGGACAAAATGCAAGCTTTGCAAGAAGTAAAGAAGTTAACAGATACTTTGGAGAAGGATGCAGAAAACTGTAATTGGCTGCAACAGTTCTTGTAG
Predicted protein sequences of Glyma17g13050
>Glyma17g13050.1   sequence type=predicted peptide   gene model=Glyma17g13050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAENFDDLNNKLPELKLDSKQAQGFLSFFKTLPDDPRAVRFFDRRDYYTAHGENATFIAKTYYHTTTAMRQLGSGSNALSSVSVSRNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNIGSFEDVLFANSEMQDSPVVVALSLNYRENGCTIGLGFVDLTKRVLGMAEFLDDSHFTNVESAFVALGCKECILPIESGKSTENRMLCDVLTKCGVMLTEKKKSEFKTRDLVQDLGRLVKGPIEPVRDLVSGFEFAPGALGALLSYAELLADESNYENYTLRSYNLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHVWLKQPLVDVKEINSRLDIVQAFVEDTALRQDLRQHLKRISDIERLMHNIQKRRAGLQHIVKLYQSSIRLPYIKSALERYDGQFSTMMRSRYLEPIELWTDDEHLNKFIGLVEASVDLDQLENREYMISPSYDSILANLKDQQELLESQIQNLHRQTADDLDLPMDKALKLDKGTQFGHVFRITKKEEPKIRKKLNTQFIILETRKDGVKFTNTKLKKLGDQYQQILEEYKSCQKKLVDRVVQTAATFSEVFESLAEIISELDVLLSFADLASSCPTPYTRPDITSSDEGDITLEGCRHPCVEAQDWVNFIPNDCKLVRGKTWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDNASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHFHELTALALENVSNDSQKQIVGVANYHVSAHIDSSTRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFSPSATSLNHTTQEVGSKRKRAFEPDDMSQGAAKARQFLEAFVALPLETMDKMQALQEVKKLTDTLEKDAENCNWLQQFL*






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