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Report for Sequence Feature Glyma17g13000

Feature Type:gene_model
Chromosome:Gm17
Start:9916411
stop:9925521
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g13000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18520AT Annotation by Michelle Graham. TAIR10: histone deacetylase 15 | chr3:6361605-6365367 FORWARD LENGTH=552 SoyBaseE_val: 0ISS
GO:0009294GO-bp Annotation by Michelle Graham. GO Biological Process: DNA mediated transformation SoyBaseN/AISS
GO:0016575GO-bp Annotation by Michelle Graham. GO Biological Process: histone deacetylation SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004407GO-mf Annotation by Michelle Graham. GO Molecular Function: histone deacetylase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1342 KOG Histone deacetylase complex, catalytic component RPD3 JGI ISS
PTHR10625Panther HISTONE DEACETYLASE JGI ISS
PTHR10625:SF22Panther HISTONE DEACETYLASE-RELATED JGI ISS
PF00850PFAM Histone deacetylase domain JGI ISS
UniRef100_B9RE34UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histone deacetylase hda1, putative n=1 Tax=Ricinus communis RepID=B9RE34_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233EDE7UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EDE7 related cluster n=1 Tax=unknown RepID=UPI000233EDE7 SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g13000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g13000
ParalogEvidenceComments
Glyma05g07991 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g13000 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g120900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g13000
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g13000
>Glyma17g13000.1   sequence type=CDS   gene model=Glyma17g13000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTAGTGGAGCTCTCAAAACGACTGAGAACAGTCTTCACAAGCAAGCTTCTCAGGTTTCCGATGCCAATGATGCAGTTGCTGACCCTGATATTCCTGCAAAGAGAGCCAGGCTGCAGAAGGAACAGAAGGATTTGACCTTTCAGGACATATATCAAAATGATGGCGTGTTTGACGACGAAGACAGTGATTGGGAGCCGTTTCAGTTACACAAGTGTATGGATTTTGAAATCAAAAAGTGGTTCTGCAGAAATTGTACCATGGTTAACCTCGATCACGATGACTGTTGCTACATATGCGGGGAGCATACGGATTCTAAAATCCTTAGCCATGGGTTTTTTGCATCTCCTTTAGCCCAAGATGAGAATCTGACTGAAGTCCAGGGGATCGCTAAAGGACTGAAAGATGTTGGCTCACAGGAATTAGTGGCAAATAGTTCTACAGCAATCGGCTTTGATGAGAGAATGTTGTTACATGCAGAAGTTGAAAAGAAATCCACTCTGCATCCTGAGAGGCCAGATCGTCTTCAAGCAATTGCTGCTAGTCTTGCTAGAGCTGGCATATTTCCTGGAAAATGCTATTCAATTCCTGCTAGAGAAATCACACCAGAAGAACTTATTACGGTTCATTCCTTGGAGCATATTGAATCTGTGGAAGTTACAAGCGAATCACTTTCTAGTTATTTCACTTCTGACACATATGCCAATGAGCATTCAGCACTTGCTGCTAGGTTGGCAGCTGGGTTATGTGCTGATCTAGCATCAGCAATTGTTTCTGAGCGAGCCAAAAATGGATTTGCTTTGGTTAGGCCTCCTGGTCATCATGCTGGTGTAAGACATGCAATGGGGTTCTGCCTTCACAATAATGCTGCTGTGGCTGCATTGGCAGCTCAAGCTGCAGGGGCTAGGAAGGTGCTAATTTTGGATTGGGATGTTCATCACGGAAATGGGACACAAGAAATATTTGAACAAAACAAATCGGTCTTGTATATATCATTGCATAGACACGAGGGAGGAAAATTTTATCCTGGTACTGGAGCTGCTGAAGAGGTTGGTAGTATGGGTGCAGAAGGATACTGTGTGAATATTCCATGGAGTCGAGGAGGAGTTGGTGACAATGACTATATTTTTTCATTTCAGCATGTTGTCCTTCCTATAGCTGCTGAGTTTAATCCAGATTTTACCATAGTATCTGCTGGATTTGATGCTGCAAGAGGTGATCCCCTAGGATGTTGCGATATTACTCCCTCTGGCTATGCACATATGACACATATGTTGAATGCCCTTTCTGGCGGAAAATTGCTTGTTATTCTTGAGGGGGGCTATAATCTTCGTTCTATATCATCTTCTGCAACTGCAGTAATCAAGGTATTACTGGGTGAGAGTCCTGGATGTGAACTGGAAAATAGTTTCCCTTCCAAAGCTGGCCTGCAAACTGTTTTGGAAGTCCTCAAAATTCAGATGAACTTTTGGCCTGCCCTGGGTCCCATTTTTGTGACTTTGGAGTCACAATGGAGGGTGTACTGTTTTGGAAAAAAAAGGAAACATATTAAGAAACGACACCGAATTCTGGTTCCAATGTGGAGGTGGGGACGAAAGTTTATTATTCCATTTTCTGAACGGCCACCTTAA
Predicted protein sequences of Glyma17g13000
>Glyma17g13000.1   sequence type=predicted peptide   gene model=Glyma17g13000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSGALKTTENSLHKQASQVSDANDAVADPDIPAKRARLQKEQKDLTFQDIYQNDGVFDDEDSDWEPFQLHKCMDFEIKKWFCRNCTMVNLDHDDCCYICGEHTDSKILSHGFFASPLAQDENLTEVQGIAKGLKDVGSQELVANSSTAIGFDERMLLHAEVEKKSTLHPERPDRLQAIAASLARAGIFPGKCYSIPAREITPEELITVHSLEHIESVEVTSESLSSYFTSDTYANEHSALAARLAAGLCADLASAIVSERAKNGFALVRPPGHHAGVRHAMGFCLHNNAAVAALAAQAAGARKVLILDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGKFYPGTGAAEEVGSMGAEGYCVNIPWSRGGVGDNDYIFSFQHVVLPIAAEFNPDFTIVSAGFDAARGDPLGCCDITPSGYAHMTHMLNALSGGKLLVILEGGYNLRSISSSATAVIKVLLGESPGCELENSFPSKAGLQTVLEVLKIQMNFWPALGPIFVTLESQWRVYCFGKKRKHIKKRHRILVPMWRWGRKFIIPFSERPP*






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