SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G56120 | AT | Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:20823243-20826357 FORWARD LENGTH=468 | SoyBase | E_val: 0 | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0016570 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone modification | SoyBase | N/A | ISS |
| GO:0048449 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ formation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0016740 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity | SoyBase | N/A | ISS |
| KOG2078 | KOG | tRNA modification enzyme | JGI | ISS | |
| PTHR16631 | Panther | GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED | JGI | ISS | |
| PTHR16631:SF1 | Panther | GLUCAN 1,3-BETA-GLUCOSIDASE | JGI | ISS | |
| PF00332 | PFAM | Glycosyl hydrolases family 17 | JGI | ISS | |
| PF02475 | PFAM | Met-10+ like-protein | JGI | ISS | |
| PF07983 | PFAM | X8 domain | JGI | ISS | |
| UniRef100_F6HH45 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: tRNA (guanine(37)-N1)-methyltransferase 2 n=1 Tax=Vitis vinifera RepID=TRM52_VITVI | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MUF6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUF6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g12985 not represented in the dataset |
Glyma17g12985 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g08011 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g120800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g12985.1 sequence type=CDS gene model=Glyma17g12985 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGGACGAGAGCAAGTTCGAGGTGCACCTCAAACTCTGGGCCCTTCGAATCCCTTGCCAACATTGCAAGCTCGCCACGAGAATCCTCAACGGTTACTTGCTCGACAAGCCCCGAGTTAAACCCATCGCCGAGGACCCAACCTGTGACAAAAACCGTTACCTTATACTCTCTGACAATGTTCATAATCAAGATTTATCTGATATTCCAAAACAAAAGCTAGATGAGCTCAAGGGCTTGTGTGAGATTGAAATTGTGCCCTATTCGTTGACTTTAGGGTATTCTCACTGGAATCATGTGCTGAAGCAGATACTGCCTACTGGAGTGGAGGTGCCTTCGTCCTTTGAAACAATTGTTAATAGTGAGCCTTCATTTCTGTTAACAATTAAATCTGTTTGGTCAGCCACTGATGGTCAAATTGCCCATTTAAACCTACACGATGAGTTACTTCCCTACAAAGATGTTATTGCAAAGGTTATTTATGATAAAAACTATCCAAGAATCAAAACTATTGTTAATAAAGTTGGAACCATTACAAATGAATTTCGTGTGCCAGAGTTTGAAATTTTAGCAGGAGAGCATAATATGATTACAGAAGTGAAGCAATATGGTGCCACTTTTAGGCTTGATTACAGATTGGTTTATTGGAACTCGAGATTGGAACATGAACACAAAAGGTTAGTCTCAATGTTCCAAGCTGGACAGACCATTTGTGACATGTTTACTGGTATAGGCCCTTTTGCCATTCCTGCTGCACAAAAAGGATGCATAGTCTATGCAAATGATTTAAATCCGGATAGCATTCACTATCTGAGGATTAATGCCAAAATCAATAAGGTTGATGATCGCATTTATGCATACAACATGGATGCTAGAAAATTCATCTCCCAGATGATGGAAGTTCCAAATAATGAAGTTACATTAGAAACCTCACATGAAGTTCCCATTTTGGATACACGAGACAATGCTGAATCAAATTCTGAAAATGAGTTGCTAACTGTTGATACCAAAGACCTAGGAGATAGCAATAATAGTGGGTTAGAGGATGTAAAGGGTTCAACAAGGCACACTGCTACATCTGTAATTGCTGGTAAAAGATCTTCTACTAGTTATCATGAAGGTTGTAGGAGAAAAGGAAGCACAAACAAAAGAATGAGAGGCTCTGAAATCTGTGTCACAAAAACTTGGGAACATGTTGATCACGTAATAATGAACCTACCTGCATCTGCTGTTCAGTTTCTAGATGCATTCAGGGGATTAATCCAGAAGAAATATTGGAAAGGATGTCTACCATGGATTCACTGCTATTGCTTCATTAGGGCGACTGAAACTCCTGAGACTATAATAGCTGTGGCAGAATCTGCTTTGAACACTCGTATACAAGACTCAACATTTCATAGGGTTAGGGATGTGGCTCCAAACAAGGCAATGTATTGTTTAAGCTTCAGGTTGCCAGAAGCATGCCTTAAAGAAGATAATTTTGAATCAGGTCAAAGGTTTCCTCAAAATAGTGATTTTGATTACCATAAAATGGAACAAGAAAAGGCACTTTGTGTTAGATACCTAGCGGCATTCCTTCTTGTGTTCTTCACCATGGCCTCATGCGGCTCAGGTGTTGGAGTTAACTGGGGAACCATGGCAACTCATAAGCTTCCCCCAAATAAGGTGGTCAAGATGCTTCAAGAAAACCGTATCGATAAACTGAAGCTGTTTGATGCTGAAGAGTGGATTATGGCAGCACTGATGGGGACTGATATTGAAGTGATGCTGGCAATACCCAATAACATGTTGGAGGAAATGAGTAGGAATCCTCAGGTTGCAGATTCTTGGGTTTATGAAAATGTCACTGGTTACATGTACCCTGGTGGACTAAATATCAAGTATATTGCTGTGGGAAATGAACCTTTCCTTAAGGAATATAATGGCGCCTATCTACAGTCAACTCTGCCAGCTCTTAAGAACATACAAACAGCACTCAATAGTTGGGGCTTTGGTTCACAGATTAAAGTCACTGTTCCCTTCAATGCTGATGTTTACTATTCCCCTGACTCAAATCAAGTGCCATCAGCTGGTGACTTCAGGCCTGAAGTACGAGACCAAACCATTGAAATAGTCCAATTCTTATATGCAAACAATGCACCTTTCACAGTCAACATCTACCCTTTCCTTAGTCTTTATGGAAATGATCATTTCCCTTTTGATTTTGCATTTTTTGATGGGAGCAACAGGCCTCTTATAGACGGTAATTCGGCTTATACCAATGTGTTTGATGCAAATTTGGATACCCTTCTCTGGGCCTTAGAGAAGTCAGGGTATCCAGATATTGAAGTTATAGTTGGAGAAGTTGGATGGCCAACTGATGGTGACAAAAATGCTAATGTCCAGAATGCAAAAAGAAAAGGCATAATTGACATTTATCTATTCAGTCTGGTTGATGAGAATGCTAAAAGTATTGCTCCTGGCAACTTTGAGAGGCACTGGGGGATTTTTGAGTTTGATGGCAAGCCAAAGTATGAATTGGACTTAAGAGGACTTGAAGAGAATAACGGTTTGGTCCCTGTGGAGGGTATAAGGTACATGGAAAAGCAATGGTGTATCTTGGATTCAAATGTTAAGGACCTGCATAACTTAGCTGAGAGTATTGACTATGCTTGTAGCAAATCAGATTGCACTGCTTTGGGCTATGGTTCTTCTTGTAACAGTCTAAGTCTCCAAGGGAATGCTTCTTATGCCTTTAATATGTATTATCAAGTAAATAACCAAAAGGATTGGGATTGTGATTTCTCTGGCTTGGCTACAGTAACAGATGAGGATCCATCTGAAAAGGGTTGTCAATTCCCGATAATGATCTCTTATGGCTCTTCTTTACTACAGCAGGAAAGGCTAACAAACATTCTGAAGAAAGCTTTGGGTATATATATATTTGTAATTTTACTATAG
>Glyma17g12985.1 sequence type=predicted peptide gene model=Glyma17g12985 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLDESKFEVHLKLWALRIPCQHCKLATRILNGYLLDKPRVKPIAEDPTCDKNRYLILSDNVHNQDLSDIPKQKLDELKGLCEIEIVPYSLTLGYSHWNHVLKQILPTGVEVPSSFETIVNSEPSFLLTIKSVWSATDGQIAHLNLHDELLPYKDVIAKVIYDKNYPRIKTIVNKVGTITNEFRVPEFEILAGEHNMITEVKQYGATFRLDYRLVYWNSRLEHEHKRLVSMFQAGQTICDMFTGIGPFAIPAAQKGCIVYANDLNPDSIHYLRINAKINKVDDRIYAYNMDARKFISQMMEVPNNEVTLETSHEVPILDTRDNAESNSENELLTVDTKDLGDSNNSGLEDVKGSTRHTATSVIAGKRSSTSYHEGCRRKGSTNKRMRGSEICVTKTWEHVDHVIMNLPASAVQFLDAFRGLIQKKYWKGCLPWIHCYCFIRATETPETIIAVAESALNTRIQDSTFHRVRDVAPNKAMYCLSFRLPEACLKEDNFESGQRFPQNSDFDYHKMEQEKALCVRYLAAFLLVFFTMASCGSGVGVNWGTMATHKLPPNKVVKMLQENRIDKLKLFDAEEWIMAALMGTDIEVMLAIPNNMLEEMSRNPQVADSWVYENVTGYMYPGGLNIKYIAVGNEPFLKEYNGAYLQSTLPALKNIQTALNSWGFGSQIKVTVPFNADVYYSPDSNQVPSAGDFRPEVRDQTIEIVQFLYANNAPFTVNIYPFLSLYGNDHFPFDFAFFDGSNRPLIDGNSAYTNVFDANLDTLLWALEKSGYPDIEVIVGEVGWPTDGDKNANVQNAKRKGIIDIYLFSLVDENAKSIAPGNFERHWGIFEFDGKPKYELDLRGLEENNGLVPVEGIRYMEKQWCILDSNVKDLHNLAESIDYACSKSDCTALGYGSSCNSLSLQGNASYAFNMYYQVNNQKDWDCDFSGLATVTDEDPSEKGCQFPIMISYGSSLLQQERLTNILKKALGIYIFVILL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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