Glyma17g12960 - SoyBase

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Report for Sequence Feature Glyma17g12960

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9894247
stop:	9897982
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25670	AT	Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: copper ion binding (TAIR:AT4G32610.1); Has 43784 Blast hits to 26928 proteins in 1799 species: Archae - 86; Bacteria - 6347; Metazoa - 15971; Fungi - 5398; Plants - 1931; Viruses - 259; Other Eukaryotes - 13792 (source: NCBI BLink). \| chr2:10929062-10930619 REVERSE LENGTH=318	SoyBase	E_val: 2.00E-31	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6TJF3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TJF3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q7XA59	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: M355 n=1 Tax=Lilium longiflorum RepID=Q7XA59_LILLO	SoyBase	E_val: 2.00E-36	ISS

Expression Patterns of Glyma17g12960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12960

Paralog	Evidence	Comments
Glyma05g08030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g120600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g12960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g12960

Limit To All Plant Sequences

>Glyma17g12960.1   sequence type=CDS   gene model=Glyma17g12960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGCAGGAGGGACGAGGCGCCCGCCATAAACAGCACCAACGTCTTCGCCGCCCTCGGAAGCCTCAAGAAGAAGAAGAAGAAGCCCGAGAAGGACCACCAGGGCCCGTCCAAGCCCAAGGACAAGAAGGACGTCTTTTGGGCCCCCGCGCCTCTCACCTCCAAGTCATGGGCCGATGTTGACGACGAAGATGACGACGACTACTACGCCACCACCGCTCCTCCCGAATCTGTTTGGGCCGCGCCGACCGTCACTCAAAACGACGCCGCTGCTGCTGAGGAAAGTGAGAGTGAGTTGGAAGGTCTTGATGATGCAGATGATGATGCTGAGGATGAACAAGAAAATGAAAATGACTTAGAAGTGACAGAAGAAGCTGAGCCTGTTCTCCGGAAGCCTCCTGAACCACCAGTGGTTACAAAAGAAGCTGAAAGGCAACTTTCTAAGAAGGAATTAAAGAAAAAGGGGCTTGAAGAACTTGAAGCTGTTTTGGCTGAGCTAGGATACACACCGAAGGAACCCACTGGCCAAGAAGATGATTCCAATGGTGCTGAGAAGAAAGAAGAGGATCCTAATGGTGCTGTGGAAAAGAAGGAGAATGCTACCGGGGAAAGCAAAAATGCTAAAAAGAAGAAGAAGAAGGACAAATCTTCAAAGGAGCAGAAAGAATCACAAGACCAGCCTCATGGTGTGGATGCTGGAACTGGAAATGCAACTTCTGAAACTGCTGAAACGGAGAAGGCTGAGGATGCATCTGCAATTGATGTTAAAGAGAGGCTTAAGAAGGTTGCTTCAATGAAGAAGAAGAAATCAAGCAAGGAGATGGATGCTGCTGCTCGTGCTGCTGCAAATGAGGCTGCTGCAAGGAATGCAAGGCTGGCTGCATCCAAGAAAAAAGAGAAGGCCCACTACAATCAGCAACCAGTGCGGTAA

Predicted protein sequences of Glyma17g12960

Limit To All Plant Sequences

>Glyma17g12960.1   sequence type=predicted peptide   gene model=Glyma17g12960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSRRDEAPAINSTNVFAALGSLKKKKKKPEKDHQGPSKPKDKKDVFWAPAPLTSKSWADVDDEDDDDYYATTAPPESVWAAPTVTQNDAAAAEESESELEGLDDADDDAEDEQENENDLEVTEEAEPVLRKPPEPPVVTKEAERQLSKKELKKKGLEELEAVLAELGYTPKEPTGQEDDSNGAEKKEEDPNGAVEKKENATGESKNAKKKKKKDKSSKEQKESQDQPHGVDAGTGNATSETAETEKAEDASAIDVKERLKKVASMKKKKSSKEMDAAARAAANEAAARNARLAASKKKEKAHYNQQPVR*

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