Report for Sequence Feature Glyma17g12920
Feature Type: gene_model
Chromosome: Gm17
Start: 9834391
stop: 9837795
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g12920
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G19930 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function DUF92, transmembrane | chr5:6737872-6739283 REVERSE LENGTH=288
SoyBase E_val: 6.00E-130 ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
KOG4491
KOG
Predicted membrane protein
JGI ISS
PTHR13353 Panther
FAMILY NOT NAMED
JGI ISS
PF01940 PFAM
Integral membrane protein DUF92
JGI ISS
UniRef100_G7JU49 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein n=1 Tax=Medicago truncatula RepID=G7JU49_MEDTR
SoyBase E_val: 2.00E-143 ISS
UniRef100_I1MUE6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUE6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g12920
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g12920
Paralog Evidence Comments
Glyma05g08090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g12920 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g120200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g12920
Coding sequences of Glyma17g12920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g12920.1 sequence type=CDS gene model=Glyma17g12920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGATTTCCAATTCAATGGACTTTCTTCAACTCTTCATTGCTGTCTTCATCGCGTTCTCAATCGCATTCAGAGCTCACCGAAAAAAATCCCTCAGCACTTCTGGCGCAATCGCTGGGTTCTTCGTTATGGCCCTTCACATTTTTGTGGGTTACAGGTTTGGGGCGATGCTGCTTGCGTTCTTTTACTCTTCGTCCACTCTCACAAAGGTAGGAGAGGATATAAAGCGAATAGTTGATCCTGAATTCAAAGAAGGTGGACAAAGAAACTGGATACAAGTTCTGGCCAATAGTGGCATTGCCTCGGTTCTGGTCGTAGCTATATGGGTACTCACCGAAGGGAAGGATAAATGCTTGAACTCTGAAGAGTCACCTCTGATCACTGCTCTCATTGGTGCTGTTATAGGCCATTATTCCTGCTGCAATGGAGATACTTGGTCTTCGGAGCTTGGAATTCTCAGTGATGAGAAGCCTCGTCTAATCACAAACTTCAAGTTTGTGAAGAAAGGTACAAATGGTGGTGTGACAAAAAGAGGACTTCTAGCAGCTGCAGCAGCTGGAAGTGTCATTGGACTGTCGTTTGTTCTTTTGGGAATCTCAGCTACCAGATGTGAGGGTAAGGGTAGTACAGTTCTTAAGCAACTACTGGTCATACCCATCGCCACCCTTGCAGGACTATGTGGAAGTGTCATTGACTCTCTCCTGGGTGCAACATTGCAATTCACCGGATTTTGCTCCATTCGCGGCAAGATGGTTGGAAAGCCAGGACCAACAGTTAGAAGGATTTCAGGTGCCAACATTCTTGACAACAACGCAGTGAATTTCGTATCAATACTGTTGACCTCATTTTTTACTTCAATCGCTTGTTTGTACATTTTCTGA
Predicted protein sequences of Glyma17g12920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g12920.1 sequence type=predicted peptide gene model=Glyma17g12920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAISNSMDFLQLFIAVFIAFSIAFRAHRKKSLSTSGAIAGFFVMALHIFVGYRFGAMLLAFFYSSSTLTKVGEDIKRIVDPEFKEGGQRNWIQVLANSGIASVLVVAIWVLTEGKDKCLNSEESPLITALIGAVIGHYSCCNGDTWSSELGILSDEKPRLITNFKFVKKGTNGGVTKRGLLAAAAAGSVIGLSFVLLGISATRCEGKGSTVLKQLLVIPIATLAGLCGSVIDSLLGATLQFTGFCSIRGKMVGKPGPTVRRISGANILDNNAVNFVSILLTSFFTSIACLYIF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
