Glyma17g12910 - SoyBase

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Report for Sequence Feature Glyma17g12910

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9801058
stop:	9812412
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26910	AT	Annotation by Michelle Graham. TAIR10: pleiotropic drug resistance 4 \| chr2:11481623-11487874 FORWARD LENGTH=1420	SoyBase	E_val: 0	ISS
GO:0006855	GO-bp	Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport	SoyBase	N/A	ISS
GO:0042335	GO-bp	Annotation by Michelle Graham. GO Biological Process: cuticle development	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
GO:0042626	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances	SoyBase	N/A	ISS
KOG0065	KOG	Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily	JGI		ISS
PTHR19241	Panther	ATP-BINDING CASSETTE TRANSPORTER	JGI		ISS
PTHR19241:SF10	Panther	ATP-BINDING CASSETTE TRANSPORTER-RELATED	JGI		ISS
PF00005	PFAM	ABC transporter	JGI		ISS
PF01061	PFAM	ABC-2 type transporter	JGI		ISS
PF08370	PFAM	Plant PDR ABC transporter associated	JGI		ISS
UniRef100_D7LFE1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATPDR4/PDR4 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LFE1_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1MUE5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUE5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g12910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12910

Paralog	Evidence	Comments
Glyma05g08100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g120100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g12910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g12910

Limit To All Plant Sequences

>Glyma17g12910.1   sequence type=CDS   gene model=Glyma17g12910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAACTCCGCCGAGAACGCCTTCGCCAGATCGTCGTCGTTCAGGGAGGAAACTGAGGACGAGGAAGCGTTGCGCTGGGCGGCGCTCGAGAGGCTTCCCACGTACAAGCGAGCGCGCCGCGGAATCTTCAAGAATGTCATTGGCGACATCAAGGAGATCGACGTCAGAGATCTCCAGGCGCAGGAGCAGCGCCTTCTTCTTGAAAGGCTCGTTGACTGTGTCGACAATGATCCTGAGAGGTTCTTCCAACGCATGAGAAGCCGATTTGACGCAGTAGGTTTGCATTTTCCGAAAATCGAAGTTCGATTTCAGGACTTGACCGTTGAGACTTACGTACATGTCGGTAGCAGAGCTCTGCCAACGATTCCCAATTTCATTTGTAATATGACTGAGGCTCTTTTAAGACAGTTGCGGATGTACAGAAGAAAGAGAAGCAAATTGACAATTCTAGCAGATATCAGTGGGATTATTAAACCTTCAAGGCTAACGTTGCTGTTGGGTCCGCCAAGCTCTGGAAAAACAACACTACTATTAGCTCTTGCTGGTAGGCTAGGACCTGGGTTGCAGATGTCAGGGAACATTACATACAATGGACATAGCCTGAAAGAGTTCGTTCCTCAGAGAACCTCTGCCTATGTTAGCCAACAAGATCGGCATGTGGCAGAGATGACCGTGAGAGAAACTCTCCAGTTTGCTGGTCGCTGTCAAGGCGTTGGATTTAAATTTGATATGTTGCTGGAACTTGCCAGAAGAGAAAAGAATGCTGGAATAAAACCAGATGAAGATCTTGATCTGTTCATGAAGTCATTAGCTCTCGGGGGACAGGAAACAAATCTTGTGGTGGAGTACATCATGAAGATATTAGGTTTGGACATATGTGGTGACACATTAGTGGGAGATGAAATGCTCAAGGGCATCTCAGGGGGGCAAAAGAAGCGGCTTACAACAGGTGAATTATTAATTGGTCCAGCAAGAGTGCTGTTCATGGATGAGATATCAACTGGTCTTGATAGTTCAACTACTTATCAAATTATCAGATATCTTAAGCATTCAACCCGTGCACTTGATGGGACCACAATTGTATCCCTTCTTCAACCAGCTCCAGAGACCTATGAATTGTTTGATGATGTTATTCTTTTGTGCGAGGGTCAGATTGTATATCAGGGTCCCCGTGAAGCTGCTGTTGATTTTTTCAAACAAATGGGATTCAGTTGTCCTGAGCGAAAAAATGTAGCAGATTTCTTACAAGAAGTTACGTCTAAGAAGGACCAAGAGCAGTACTGGTCCGTTCCCGATCGCCCTTACCGATACGTACCTGTTGGGAAATTCGCTGAAGCATTTTCCTTGTATCGTGAGGGAAGGATTTTGTCTGAGCAACTAAATTTACCTTTCGATAGACGCTATAATCATCCAGCTGCCTTGGCAACTGTTAGCTATGGCGCGAAAAGGCTCGAACTTCTCAAGACTAATTACCAGTGGCAGAAGCTTCTTATGAAGCGGAACTCATTTATCTATGTTTTTAAATTTGTTCAGCTGCTTTTGGTTGCCTTAATTACAATGAGTGTTTTCTTCCGAACAACGATGCACCATAATACAATTGACGATGGAGGCTTATATCTTGGGGCACTGTACTTCTCTATGGTTATTATTCTTTTCAATGGTTTTACCGAGGTGTCAATGTTAGTTGCAAAGCTTCCAGTTCTTTACAAGCACAGAGATTTGCATTTCTATCCTAGCTGGGCATATACACTTCCTTCTTGGTTCCTTAGTATCCCAACTTCCCTGATAGAGGCTGGATGCTGGGTGACGGTCTCTTACTATGCAAGTGGATATGATCCTGCATTTACTAGATTTTTGCGGCAGTTCTTGCTTTTTTTCTTCCTGCACCAGATGTCTATAGGTCTGTTTCGTTTGATAGGATCCTTGGGCCGGAATATGATAGTATCCAATACCTTTGGATCCTTTGCCATGTTGGTTGTAATGGCTCTTGGCGGATATATAATTTCAAGAGACCGTATACCTGTTTGGTGGATATGGGGTTTTTGGATTTCTCCATTGATGTATGCACAAAACTCAGCTTCTGTGAACGAGTTCCTTGGACATTCTTGGGATAAGAAAGCTGGAAATCAGACTACCTATTCATTGGGTGAGGCAGTATTAAAAGAGCGAAGTTTGTATGCAGAAAACTATTGGTATTGGATTGGTCTTGGGGCAATGGTTGGATACACAATTTTGTTCAACATTCTATTTACAATCTTCTTGGCTTACCTTAATCCCTTGGGAAGACAACAAGCTGTAGTTTCAAAGGATGAGCTGCAAGAAAGAGAAAAGAGAAGAAAAGGTGAAAGTGTTGTTATAGAGCTGAGAGAGTACTTGCAGCGTTCGGCATCAAGTGGAAAGCATTTTAAGCAAAGGGGAATGGTTCTCCCATTTCAACCACTTTCCATGGCTTTCAGCAATATCAATTACTATGTGGATGTCCCTTTGGAATTGAAACAACAAGGGATAGTAGAGGACAAGCTACAGCTTCTTGTTAATGTTACCGGAGCCTTTAGACCTGGTGTGTTGACAGCATTGGTTGGAGTAAGTGGTGCCGGAAAAACGACGCTGATGGATGTGTTAGCTGGCAGAAAAACTGGTGGAGTCATAGAAGGGAGTGTATATATATCTGGCTATCCCAAAAGGCAAGACTCTTTTGCAAGAATTTCCGGTTACTGTGAGCAAACTGACGTTCATTCCCCTTGTTTGACTGTCTGGGAATCCTTACTGTTCTCTGCTTGGCTTCGATTATCTTCAGACGTTGACTTCGAGACACAAAAGGCCTTCGTTGAGGAGGTAATGGAGCTTGTGGAGCTCACTCCGTTAAGTGGAGCACTAGTGGGCCTACCTGGAATTGATGGTCTGTCAACTGAACAGCGAAAAAGATTGACTATAGCTGTTGAATTGGTTGCCAATCCTTCTATAGTCTTCATGGATGAACCCACTTCTGGATTGGATGCCCGGGCTGCAGCCATTGTGATGAGAACTGTGAGGAATATAGTGAATACTGGGCGAACAATTGTGTGCACGATCCATCAGCCTAGCATAGACATATTTGAATCCTTTGATGAGCTTCTGTTTATGAAAAGGGGAGGAGAGCTCATTTATGCTGGTCCACTTGGCCCTAAATCGAGTGAACTAATTAGTTATTTCGAGGCAATCGAAGGAGTTCCAAAGATCAGGTCTGGATATAACCCTGCTACGTGGATGCTGGAGGCTACTTCTTCAGTTGAAGAAAACAGATTGGGAGTGGACTTTGCAGAAATCTACAGAAAATCAAGTTTATATCAATATAACCAAGAGTTGGTTGAAAGGTTGAGCAAGCCTAGTGGTAATTCAAAAGAATTGCATTTTCCAACCAAGTATTGCCGGTCATCTTTTGAGCAGTTCCTAACTTGTCTATGGAAGCAAAATCTTTGTTACTGGCGTAACCCTCAGTACACTGCTGTTCGCTTTTTTTACACTGTCATAATCTCATTGATGCTTGGGTCAATATGCTGGAGATTTGGTGCTAAAAGGGAAACGCAGCAAGATCTATTCAATGCCATGGGATCGATGTATTCGGCAATCCTCTTCATTGGTATAACAAATGGCACAGCTGTTCAGCCTGTTGTTTCTGTGGAAAGATTTGTTTCTTATAGAGAAAGAGCTGCAGGGATGTATTCGGCTTTATCATTTGCATTTGCTCAGGTTGTGATTGAGTTCCCTTATGTGTTCGCACAAGCTATTATATACTCTTCAATATTCTATTCCATGGCTTCCTTTCTCTGGACTTTTGATCGGTTCATTTGGTACTTATTCTTCATGTATTTTACGATGTTATATTTTACCTTCTATGGAATGATGACAACGGCTGTCACACCAAATCATAACGTTGCTGCCATCATTGCTGCTCCATTTTATATGTTGTGGAACCTTTTCAGTGGTTTTATGATTCCTCACAAGAGGATCCCTATTTGGTGGAGATGGTATTACTGGGCAAACCCTGTAGCATGGAGTCTGTATGGTCTGCTAACTTCACAGTATGGTGGCGATACTCATTTAGTGAAGCTCTCTGATGGAAACTCGATGACTATAAGAGAGGTACTCAAACACGTGTTTGGGTACAGGCATGATTTCTTGTGCGTTACTGCTGTTATGGTGGCGGGCTTCTGCATATTTTTTGGAGTTATATTTTCATTTGCAATTAAATCCTTCAATTTCCAAAGGAGATGA

Predicted protein sequences of Glyma17g12910

Limit To All Plant Sequences

>Glyma17g12910.1   sequence type=predicted peptide   gene model=Glyma17g12910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWNSAENAFARSSSFREETEDEEALRWAALERLPTYKRARRGIFKNVIGDIKEIDVRDLQAQEQRLLLERLVDCVDNDPERFFQRMRSRFDAVGLHFPKIEVRFQDLTVETYVHVGSRALPTIPNFICNMTEALLRQLRMYRRKRSKLTILADISGIIKPSRLTLLLGPPSSGKTTLLLALAGRLGPGLQMSGNITYNGHSLKEFVPQRTSAYVSQQDRHVAEMTVRETLQFAGRCQGVGFKFDMLLELARREKNAGIKPDEDLDLFMKSLALGGQETNLVVEYIMKILGLDICGDTLVGDEMLKGISGGQKKRLTTGELLIGPARVLFMDEISTGLDSSTTYQIIRYLKHSTRALDGTTIVSLLQPAPETYELFDDVILLCEGQIVYQGPREAAVDFFKQMGFSCPERKNVADFLQEVTSKKDQEQYWSVPDRPYRYVPVGKFAEAFSLYREGRILSEQLNLPFDRRYNHPAALATVSYGAKRLELLKTNYQWQKLLMKRNSFIYVFKFVQLLLVALITMSVFFRTTMHHNTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTLPSWFLSIPTSLIEAGCWVTVSYYASGYDPAFTRFLRQFLLFFFLHQMSIGLFRLIGSLGRNMIVSNTFGSFAMLVVMALGGYIISRDRIPVWWIWGFWISPLMYAQNSASVNEFLGHSWDKKAGNQTTYSLGEAVLKERSLYAENYWYWIGLGAMVGYTILFNILFTIFLAYLNPLGRQQAVVSKDELQEREKRRKGESVVIELREYLQRSASSGKHFKQRGMVLPFQPLSMAFSNINYYVDVPLELKQQGIVEDKLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGSVYISGYPKRQDSFARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDFETQKAFVEEVMELVELTPLSGALVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPKSSELISYFEAIEGVPKIRSGYNPATWMLEATSSVEENRLGVDFAEIYRKSSLYQYNQELVERLSKPSGNSKELHFPTKYCRSSFEQFLTCLWKQNLCYWRNPQYTAVRFFYTVIISLMLGSICWRFGAKRETQQDLFNAMGSMYSAILFIGITNGTAVQPVVSVERFVSYRERAAGMYSALSFAFAQVVIEFPYVFAQAIIYSSIFYSMASFLWTFDRFIWYLFFMYFTMLYFTFYGMMTTAVTPNHNVAAIIAAPFYMLWNLFSGFMIPHKRIPIWWRWYYWANPVAWSLYGLLTSQYGGDTHLVKLSDGNSMTIREVLKHVFGYRHDFLCVTAVMVAGFCIFFGVIFSFAIKSFNFQRR*

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