SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G32700 | AT | Annotation by Michelle Graham. TAIR10: LEUNIG_homolog | chr2:13867235-13871844 FORWARD LENGTH=785 | SoyBase | E_val: 7.00E-179 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0009827 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification | SoyBase | N/A | ISS |
| GO:0009908 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower development | SoyBase | N/A | ISS |
| GO:0045892 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048358 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mucilage pectin biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003713 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transcription coactivator activity | SoyBase | N/A | ISS |
| KOG0266 | KOG | WD40 repeat-containing protein | JGI | ISS | |
| PTHR22847 | Panther | WD40 REPEAT PROTEIN | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| PF08513 | PFAM | LisH | JGI | ISS | |
| UniRef100_D6N3G1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: LisH-SSDP-WD40 n=1 Tax=Malus x domestica RepID=D6N3G1_MALDO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EDE4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EDE4 related cluster n=1 Tax=unknown RepID=UPI000233EDE4 | SoyBase | E_val: 0 | ISS |
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Glyma17g12900 not represented in the dataset |
Glyma17g12900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g08110 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g120000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g12900.1 sequence type=CDS gene model=Glyma17g12900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTAATCCCAACTGGGAAGCGGATAAAATGTTAGATTTGTATATTCACGATTATCTCACGAAGAGACAATTACATGCTACTGCAAGAATATTTCAGGCCGAAGGAAATGTTTCAACGGATCCTATTGTTATAGATGCACCTAGTGGTTTTCTTTTTGAGTGGTGGTCTGTCTTCTGGGACATATATATTGCCAGGGCAAATCAGAAGCTCCAAGATACAGCTCAGAAGCACCAAGAAGCAGCAGTATCTTACAGTAAGAGTCAACAAATTAAGGCTCGACTAATGCAGAAGCAACTGGAGCAAGAGCTTCAGAATACAAACCAGAATCAGCAAATGCAATTCTTATTGCAAAGACATGCTCAGCAGCAGCAGCAACGTCTGCGTGGAACTCAACTTATTAGTGGCAGTGCTAGCTGTCCTATTAGCAGTGATCCTTTGATGAGGCAGAACCGGGCAACTTCTAATGCTAATACAACAAAAACTTATGAAGACAGGTTGAAGCTTCCACTTCAGAAAGATGCCTTAGATGACACAAGCATTCAGCAAAAAGTAATTGATGATGTTGCTCAGCTTCTAAACCCAAACCATGCCTTATTGTTGAAAGCAGCAGCAACAACTGGTGAACAGGCTACAGGACAGACATTGCTCAGTGCACCTAGTATTTTACAGGGGGATATTCAGCATGTCCAAAATCTGAACCAGAAGCTTCCAGGGTCTACACAAGACTTAAACAGTGATATGAATGCAATGATGAGGTCTCAAGCTGTTGTTTCAGAAGGATCCTTTATCAGTTGTCATGGTTCAAATCAAGGTGGTAGCAATTTGACTCTTAAAGGATGGCCTCTAGCAGGACTGGATGAGCTCCGCTCAGGATTTCTCCAGCCGAATAATTTGATGCAGTCTTCACAATCTTTCCATCAACTTTCTGTACGGCAGCAACTTATGCTTCAGGCACAACAAAATTTGATTTCTCCTTCTGCCAGTGATTTTGAGAGCAGAAGACTCAGGATGCTTGTTAATGATCAAAACATGGCTCTTTTGAAAGATGGCCAATCAAATTCTTTAGGTGATTTAATTCCTGATAACAGGTCACCCGCTCAAGTTGGTTCCTCAGTGCTGCCTCATCCTGACTCAGATATGTTCCTTAAGCAACAAATTCAAAAGAGTAGTCAGCAGCATCAACAATGTTCACAGCACCCTCTTTCAAGCCATCAGTCTGAATCTCTCCAGAAGCAAGAAAAAAATGGTCCTGGAACCATGACTGTAGAGGGCAATGTGTCCAATACCTTACAAGGAAACAACCAGGTTTCCATAAGTAAAACAGGGCGGAAGAGAAAACCAGCATCATCTTCTGGTCCTGCCAATAGTTCTGGAACTGCAAACACTACAGGACCACCTATCAGTTCACCTAAAACACCATCTACACAAACACCTGCAGACATGATGACAGTGTCAACTCTGCAACAGAATGTTCCTTCCTCTAAGTCATCATTTATGTTTGGTACTGATGGTTTGGGCCCACTTACGTCAGCACAGAATCAATTGGCTGATATGGATCACCTTGTGGGTGATGGATGTTTGGGCGACAATGTTGAGTCATTCTTATCTCCTGATGATACAGATGTTAGCAAAAAAATTGGCAAAGAAATCTCATTCAAGGATATCAAGCATATAGGGGCAAGTTTGCATAAAGTTGAGTGTTGTCACTTCTCATCAGATGGAAAACTTCTTGCTACAGGTGGCCACGATAATAAGGCTTCTTTGTGGTGCACAGAATTGTTTAACCTGAAATCTACACTTGAAGAGCACAGTGAATGGATAACTGATGTTCGATTTTGTCCAAGCATGTTGCGTGTTGCTACATCCTCAGCAGACAAAACTGTTAGGGTTTGGGATGTTGATAATCCAAGTTATTCTCTTCGTACATTCACAGGACATGCAACAACTGTGATGTCACTAGATTTTCACCCTAGCAAAGATGACCTTATTTGCTCTTGTGACAATAGTGAGATAAGATACTGGAGTATTAAAAATGGTAGTTGTACTGGGGTTTTCAAGGGTGGTGCAACTCAGATGAGATTTCAACCTTGCTTGGGAAGGCTTCTTGCAGCTGCAGTGGATAATTTCGTATCCATTTTTGATGTGGAAACCCTGGGTTGCAGACTTAAATTACAGGGCCATAATAATCTTGTCCGATCTGTGTGCTGGGATTTGTCTGGAAAATTTTTGGCTTCTCTCAGTGATGATATGGTTAGAGTATGGAATGTTGCGTCCGGTGGCAAAGGGGAATGCATTCACGAGTTGAAAGATTGTAGGAACAAATTCAGCACCTGTGTTTTCCATCCCTTCTATCCTTTGCTGGTCATTGGCTGCCATGAGACTATTGAGCTGTGGGACTTCGGTGATAACAAGACAATGACTCTGCATGCACATGACGATGTTGTATCTTCCTTGGCAGTATCGAATGTTACTGGATTGGTGGCTTCAACTAGTCATGACAAGCATTTCAAGATCTGGAAGTGA
>Glyma17g12900.1 sequence type=predicted peptide gene model=Glyma17g12900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSNPNWEADKMLDLYIHDYLTKRQLHATARIFQAEGNVSTDPIVIDAPSGFLFEWWSVFWDIYIARANQKLQDTAQKHQEAAVSYSKSQQIKARLMQKQLEQELQNTNQNQQMQFLLQRHAQQQQQRLRGTQLISGSASCPISSDPLMRQNRATSNANTTKTYEDRLKLPLQKDALDDTSIQQKVIDDVAQLLNPNHALLLKAAATTGEQATGQTLLSAPSILQGDIQHVQNLNQKLPGSTQDLNSDMNAMMRSQAVVSEGSFISCHGSNQGGSNLTLKGWPLAGLDELRSGFLQPNNLMQSSQSFHQLSVRQQLMLQAQQNLISPSASDFESRRLRMLVNDQNMALLKDGQSNSLGDLIPDNRSPAQVGSSVLPHPDSDMFLKQQIQKSSQQHQQCSQHPLSSHQSESLQKQEKNGPGTMTVEGNVSNTLQGNNQVSISKTGRKRKPASSSGPANSSGTANTTGPPISSPKTPSTQTPADMMTVSTLQQNVPSSKSSFMFGTDGLGPLTSAQNQLADMDHLVGDGCLGDNVESFLSPDDTDVSKKIGKEISFKDIKHIGASLHKVECCHFSSDGKLLATGGHDNKASLWCTELFNLKSTLEEHSEWITDVRFCPSMLRVATSSADKTVRVWDVDNPSYSLRTFTGHATTVMSLDFHPSKDDLICSCDNSEIRYWSIKNGSCTGVFKGGATQMRFQPCLGRLLAAAVDNFVSIFDVETLGCRLKLQGHNNLVRSVCWDLSGKFLASLSDDMVRVWNVASGGKGECIHELKDCRNKFSTCVFHPFYPLLVIGCHETIELWDFGDNKTMTLHAHDDVVSSLAVSNVTGLVASTSHDKHFKIWK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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