Glyma17g12890 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g12890

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9780101
stop:	9786755
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26900	AT	Annotation by Michelle Graham. TAIR10: Sodium Bile acid symporter family \| chr2:11475156-11477870 REVERSE LENGTH=409	SoyBase	E_val: 0	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0006814	GO-bp	Annotation by Michelle Graham. GO Biological Process: sodium ion transport	SoyBase	N/A	ISS
GO:0006849	GO-bp	Annotation by Michelle Graham. GO Biological Process: plasma membrane pyruvate transport	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0035725	GO-bp	Annotation by Michelle Graham. GO Biological Process: sodium ion transmembrane transport	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0008508	GO-mf	Annotation by Michelle Graham. GO Molecular Function: bile acid:sodium symporter activity	SoyBase	N/A	ISS
GO:0050833	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyruvate transmembrane transporter activity	SoyBase	N/A	ISS
KOG2718	KOG	Na+-bile acid cotransporter	JGI		ISS
PTHR10361	Panther	SODIUM-BILE ACID COTRANSPORTER RELATED	JGI		ISS
PTHR10361:SF0	Panther	BILE ACID:SODIUM SYMPORTER FAMILY PROTEIN	JGI		ISS
PF01758	PFAM	Sodium Bile acid symporter family	JGI		ISS
UniRef100_G7JU57	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bile acid Na+ symporter family protein n=1 Tax=Medicago truncatula RepID=G7JU57_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MUE3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUE3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g12890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12890

Paralog	Evidence	Comments
Glyma05g08120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g119900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g12890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g12890

Limit To All Plant Sequences

>Glyma17g12890.2   sequence type=transcript   gene model=Glyma17g12890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTTCCCATCGACTCTCCATTGGATTCTCAAGTCATTTACCTTGCATGACAGCACTAAGTTACTAGACCTCGGAACAAATTGTTTTATAGAGGAATGTATAAGAGCTTAGTGTGAAAAAAGGCTGGTAAATCTTGATATCCTGATTTGTATGAAATATTTGTAGTGAGTGATGAAGCTACAATTTCTATGAAGAAGAAATGGAACTCTAAAATATTGTGCAATGCTACAACAGACATTTCTGGTGATATTCCTGAAAGTGCTGGTGAGCTGAGCCAGTACGAGAAAGTGATTGAAATATTAACAGCTCTTTTTCCTGTGTGGGTCATCTTGGGGGCCATCGTCGGCATTTACAAACCAACTGCTGTAACTTGGTTGGCGACAGATCTTTTTAGTCTTGGCTTTGGTTTCCTCATCCTCTCTATGGGCTTGACATTGACATTTGAGGATTTCAGACGGTGTCTGCGAAATCCGTGGACTGTGGGTGTAGGGTTTCTTGCACAATATTTAATTAAACCCATGCTAGGCTTTGCCATTGCAATGACTCTAAAACTTTCAGCTCCTCTTGCAACTGGTCTTATTTTGGTCGCATGTTGTCCTGGATGTCAGGCATCAAATGTTGCAACATTCATAGCCAAGGGAAATGTTGCACTCTCTGTTCTTATGACAACGTGTTCAACTATTGGAGCTATTATAATGACCCCACTCCTTACAAAGCTTCTTGCCGGTCAACTCGTTCCAGTTGATGCTGTTGGCCTGGCACTTAGTACCTTTCAGGTTGTTTTAGTCCCAACGATTGTGGGAGTTTTGGCAAATGAGCTTTTTCCCAAGTTCACTTCAAAGATAATCACCGTTACTCCTTTGATAGGAGTCATTTTGACCACTCTCCTTTGTGCAAGCCCAATTGGGCTAGCTTCAGACGTATTAAAAGCTCAAGGAGCACAACTAGTATTGCCAGTTGTTTTCCTACATGCTGCTTCATTTGCTCTTGGATATTGGGTTTCAAGAATATCATTTGGTGAATCCTCGTCACGCACTGTATCTATAGAGTGTGGGATGCAGAGCTCTGCATTTGGATTTTTGCTTGCTCAGAGGCACTTTACAAACCCTCTTGTAGCTGTTCCTTCAGCTGTTAGTGTTGTCTGCATGGCGCTTGGTGGGAGTGCTCTTGCTGTGTTTTGGACGAACAGACCAATTCCCCTCGATGACAAAGATGACTTCAAGAAATGAAAATGTGTAACTTCTATGCATATTTTCTTTTGTAGGAAAAATTTTTTATTAGTTGTTTGAGAAAAAAAATGATTTCTGAATTCACTTTAGTAGTCACTCACACATGTTAGAACATTAAGAATTTAGGATGAGTCTATAACAGGGAGTGTGGCAACCCCTTACTTTGAGAATCGCACTGCGATTTTTACTTTTTTAGTTTTTATAGTTTGAAAATAATTTTTTTAGTCCCTATAATTTATATTTTAATTCTCTTTTAGTTTTTTGTAATTTAAAAATATTTTTTTTAGTCCGT

>Glyma17g12890.3   sequence type=transcript   gene model=Glyma17g12890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGTATTGAAAAAAAAAAAAAAAAAAGAACTCAAGCCCCCTTTCACATTTCCAAAAGTTGCTTTTATTGATGAGTGTTGGAATAGCAATTTGCTAATGATTAATAACATATAAGCACAATCTGGTGTTGGCAAATCTTTTTATCTATTTTCTGGTGCTTGAACATTGACTTTCGCTTTCTTGATTTGAAGTGCTAATGACTTGTTTGTTGCTATGTTTAGGAACTCTAAAATATTGTGCAATGCTACAACAGACATTTCTGGTGATATTCCTGAAAGTGCTGGTGAGCTGAGCCAGTACGAGAAAGTGATTGAAATATTAACAGCTCTTTTTCCTGTGTGGGTCATCTTGGGGGCCATCGTCGGCATTTACAAACCAACTGCTGTAACTTGGTTGGCGACAGATCTTTTTAGTCTTGGCTTTGGTTTCCTCATCCTCTCTATGGGCTTGACATTGACATTTGAGGATTTCAGACGGTGTCTGCGAAATCCGTGGACTGTGGGTGTAGGGTTTCTTGCACAATATTTAATTAAACCCATGCTAGGCTTTGCCATTGCAATGACTCTAAAACTTTCAGCTCCTCTTGCAACTGGTCTTATTTTGGTCGCATGTTGTCCTGGATGTCAGGCATCAAATGTTGCAACATTCATAGCCAAGGGAAATGTTGCACTCTCTGTTCTTATGACAACGTGTTCAACTATTGGAGCTATTATAATGACCCCACTCCTTACAAAGCTTCTTGCCGGTCAACTCGTTCCAGTTGATGCTGTTGGCCTGGCACTTAGTACCTTTCAGGTTGTTTTAGTCCCAACGATTGTGGGAGTTTTGGCAAATGAGCTTTTTCCCAAGTTCACTTCAAAGATAATCACCGTTACTCCTTTGATAGGAGTCATTTTGACCACTCTCCTTTGTGCAAGCCCAATTGGGCTAGCTTCAGACGTATTAAAAGCTCAAGGAGCACAACTAGTATTGCCAGTTGTTTTCCTACATGCTGCTTCATTTGCTCTTGGATATTGGGTTTCAAGAATATCATTTGGTGAATCCTCGTCACGCACTGTATCTATAGAGTGTGGGATGCAGAGCTCTGCATTTGGATTTTTGCTTGCTCAGAGGCACTTTACAAACCCTCTTGTAGCTGTTCCTTCAGCTGTTAGTGTTGTCTGCATGGCGCTTGGTGGGAGTGCTCTTGCTGTGTTTTGGACGAACAGACCAATTCCCCTCGATGACAAAGATGACTTCAAGAAATGAAAATGTGTAACTTCTATGCATATTTTCTTTTGTAGGAAAAATTTTTTATTAGTTGTTTGAGAAAAAAAATGATTTCTGAATTCACTTTAGTAGTCACTCACACATGTTAGAACATTAAGAATTTAGGATGAGTCTATAACAGGGAGTGTGGCAACCCCTTACTTTGAGAATCGCACTGCGATTTTTACTTTTTTAGTTTTTATAGTTTGAAAATAATTTTTTTAGTCCCTATAATTTATATTTTAATTCTCTTTTAGTTTTTTGTAATTTAAAAATATTTTTTTTAGTCCGT

Coding sequences of Glyma17g12890

Limit To All Plant Sequences

>Glyma17g12890.1   sequence type=CDS   gene model=Glyma17g12890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTACCATCATTCTCAGAGACCATAGAGTAGCAGCAGGGGCGTATGATGCACTGCTTAAGCCAAGCTTTCGTACACCCACTTGGAAGAAGCTTCATAATTCCCATCTGGTGAAAGGCCACTTTTATCTAACCAAGAGTGGAGGAAGCTGTGCAATTCGAAGAAAGTTGCGGGGTCCAGTTGTTGCTGTTTTAGAACTTCCCTTAAGCCTTCAAGCGTCCAGAAGAAGGAACTCTAAAATATTGTGCAATGCTACAACAGACATTTCTGGTGATATTCCTGAAAGTGCTGGTGAGCTGAGCCAGTACGAGAAAGTGATTGAAATATTAACAGCTCTTTTTCCTGTGTGGGTCATCTTGGGGGCCATCGTCGGCATTTACAAACCAACTGCTGTAACTTGGTTGGCGACAGATCTTTTTAGTCTTGGCTTTGGTTTCCTCATCCTCTCTATGGGCTTGACATTGACATTTGAGGATTTCAGACGGTGTCTGCGAAATCCGTGGACTGTGGGTGTAGGGTTTCTTGCACAATATTTAATTAAACCCATGCTAGGCTTTGCCATTGCAATGACTCTAAAACTTTCAGCTCCTCTTGCAACTGGTCTTATTTTGGTCGCATGTTGTCCTGGATGTCAGGCATCAAATGTTGCAACATTCATAGCCAAGGGAAATGTTGCACTCTCTGTTCTTATGACAACGTGTTCAACTATTGGAGCTATTATAATGACCCCACTCCTTACAAAGCTTCTTGCCGGTCAACTCGTTCCAGTTGATGCTGTTGGCCTGGCACTTAGTACCTTTCAGGTTGTTTTAGTCCCAACGATTGTGGGAGTTTTGGCAAATGAGCTTTTTCCCAAGTTCACTTCAAAGATAATCACCGTTACTCCTTTGATAGGAGTCATTTTGACCACTCTCCTTTGTGCAAGCCCAATTGGGCTAGCTTCAGACGTATTAAAAGCTCAAGGAGCACAACTAGTATTGCCAGTTGTTTTCCTACATGCTGCTTCATTTGCTCTTGGATATTGGGTTTCAAGAATATCATTTGGTGAATCCTCGTCACGCACTGTATCTATAGAGTGTGGGATGCAGAGCTCTGCATTTGGATTTTTGCTTGCTCAGAGGCACTTTACAAACCCTCTTGTAGCTGTTCCTTCAGCTGTTAGTGTTGTCTGCATGGCGCTTGGTGGGAGTGCTCTTGCTGTGTTTTGGACGAACAGACCAATTCCCCTCGATGACAAAGATGACTTCAAGAAATGA

>Glyma17g12890.2   sequence type=CDS   gene model=Glyma17g12890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGAAATGGAACTCTAAAATATTGTGCAATGCTACAACAGACATTTCTGGTGATATTCCTGAAAGTGCTGGTGAGCTGAGCCAGTACGAGAAAGTGATTGAAATATTAACAGCTCTTTTTCCTGTGTGGGTCATCTTGGGGGCCATCGTCGGCATTTACAAACCAACTGCTGTAACTTGGTTGGCGACAGATCTTTTTAGTCTTGGCTTTGGTTTCCTCATCCTCTCTATGGGCTTGACATTGACATTTGAGGATTTCAGACGGTGTCTGCGAAATCCGTGGACTGTGGGTGTAGGGTTTCTTGCACAATATTTAATTAAACCCATGCTAGGCTTTGCCATTGCAATGACTCTAAAACTTTCAGCTCCTCTTGCAACTGGTCTTATTTTGGTCGCATGTTGTCCTGGATGTCAGGCATCAAATGTTGCAACATTCATAGCCAAGGGAAATGTTGCACTCTCTGTTCTTATGACAACGTGTTCAACTATTGGAGCTATTATAATGACCCCACTCCTTACAAAGCTTCTTGCCGGTCAACTCGTTCCAGTTGATGCTGTTGGCCTGGCACTTAGTACCTTTCAGGTTGTTTTAGTCCCAACGATTGTGGGAGTTTTGGCAAATGAGCTTTTTCCCAAGTTCACTTCAAAGATAATCACCGTTACTCCTTTGATAGGAGTCATTTTGACCACTCTCCTTTGTGCAAGCCCAATTGGGCTAGCTTCAGACGTATTAAAAGCTCAAGGAGCACAACTAGTATTGCCAGTTGTTTTCCTACATGCTGCTTCATTTGCTCTTGGATATTGGGTTTCAAGAATATCATTTGGTGAATCCTCGTCACGCACTGTATCTATAGAGTGTGGGATGCAGAGCTCTGCATTTGGATTTTTGCTTGCTCAGAGGCACTTTACAAACCCTCTTGTAGCTGTTCCTTCAGCTGTTAGTGTTGTCTGCATGGCGCTTGGTGGGAGTGCTCTTGCTGTGTTTTGGACGAACAGACCAATTCCCCTCGATGACAAAGATGACTTCAAGAAATGA

>Glyma17g12890.3   sequence type=CDS   gene model=Glyma17g12890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTAGGAACTCTAAAATATTGTGCAATGCTACAACAGACATTTCTGGTGATATTCCTGAAAGTGCTGGTGAGCTGAGCCAGTACGAGAAAGTGATTGAAATATTAACAGCTCTTTTTCCTGTGTGGGTCATCTTGGGGGCCATCGTCGGCATTTACAAACCAACTGCTGTAACTTGGTTGGCGACAGATCTTTTTAGTCTTGGCTTTGGTTTCCTCATCCTCTCTATGGGCTTGACATTGACATTTGAGGATTTCAGACGGTGTCTGCGAAATCCGTGGACTGTGGGTGTAGGGTTTCTTGCACAATATTTAATTAAACCCATGCTAGGCTTTGCCATTGCAATGACTCTAAAACTTTCAGCTCCTCTTGCAACTGGTCTTATTTTGGTCGCATGTTGTCCTGGATGTCAGGCATCAAATGTTGCAACATTCATAGCCAAGGGAAATGTTGCACTCTCTGTTCTTATGACAACGTGTTCAACTATTGGAGCTATTATAATGACCCCACTCCTTACAAAGCTTCTTGCCGGTCAACTCGTTCCAGTTGATGCTGTTGGCCTGGCACTTAGTACCTTTCAGGTTGTTTTAGTCCCAACGATTGTGGGAGTTTTGGCAAATGAGCTTTTTCCCAAGTTCACTTCAAAGATAATCACCGTTACTCCTTTGATAGGAGTCATTTTGACCACTCTCCTTTGTGCAAGCCCAATTGGGCTAGCTTCAGACGTATTAAAAGCTCAAGGAGCACAACTAGTATTGCCAGTTGTTTTCCTACATGCTGCTTCATTTGCTCTTGGATATTGGGTTTCAAGAATATCATTTGGTGAATCCTCGTCACGCACTGTATCTATAGAGTGTGGGATGCAGAGCTCTGCATTTGGATTTTTGCTTGCTCAGAGGCACTTTACAAACCCTCTTGTAGCTGTTCCTTCAGCTGTTAGTGTTGTCTGCATGGCGCTTGGTGGGAGTGCTCTTGCTGTGTTTTGGACGAACAGACCAATTCCCCTCGATGACAAAGATGACTTCAAGAAATGA

Predicted protein sequences of Glyma17g12890

Limit To All Plant Sequences

>Glyma17g12890.1   sequence type=predicted peptide   gene model=Glyma17g12890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTIILRDHRVAAGAYDALLKPSFRTPTWKKLHNSHLVKGHFYLTKSGGSCAIRRKLRGPVVAVLELPLSLQASRRRNSKILCNATTDISGDIPESAGELSQYEKVIEILTALFPVWVILGAIVGIYKPTAVTWLATDLFSLGFGFLILSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFAIAMTLKLSAPLATGLILVACCPGCQASNVATFIAKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAVGLALSTFQVVLVPTIVGVLANELFPKFTSKIITVTPLIGVILTTLLCASPIGLASDVLKAQGAQLVLPVVFLHAASFALGYWVSRISFGESSSRTVSIECGMQSSAFGFLLAQRHFTNPLVAVPSAVSVVCMALGGSALAVFWTNRPIPLDDKDDFKK*

>Glyma17g12890.2   sequence type=predicted peptide   gene model=Glyma17g12890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKKWNSKILCNATTDISGDIPESAGELSQYEKVIEILTALFPVWVILGAIVGIYKPTAVTWLATDLFSLGFGFLILSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFAIAMTLKLSAPLATGLILVACCPGCQASNVATFIAKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAVGLALSTFQVVLVPTIVGVLANELFPKFTSKIITVTPLIGVILTTLLCASPIGLASDVLKAQGAQLVLPVVFLHAASFALGYWVSRISFGESSSRTVSIECGMQSSAFGFLLAQRHFTNPLVAVPSAVSVVCMALGGSALAVFWTNRPIPLDDKDDFKK*

>Glyma17g12890.3   sequence type=predicted peptide   gene model=Glyma17g12890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFRNSKILCNATTDISGDIPESAGELSQYEKVIEILTALFPVWVILGAIVGIYKPTAVTWLATDLFSLGFGFLILSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFAIAMTLKLSAPLATGLILVACCPGCQASNVATFIAKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAVGLALSTFQVVLVPTIVGVLANELFPKFTSKIITVTPLIGVILTTLLCASPIGLASDVLKAQGAQLVLPVVFLHAASFALGYWVSRISFGESSSRTVSIECGMQSSAFGFLLAQRHFTNPLVAVPSAVSVVCMALGGSALAVFWTNRPIPLDDKDDFKK*

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