SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G26730 | AT | Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein | chr2:11388621-11391286 FORWARD LENGTH=658 | SoyBase | E_val: 0 | ISS |
| GO:0000272 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process | SoyBase | N/A | ISS |
| GO:0005982 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch metabolic process | SoyBase | N/A | ISS |
| GO:0006084 | GO-bp | Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process | SoyBase | N/A | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0007020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule nucleation | SoyBase | N/A | ISS |
| GO:0007169 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway | SoyBase | N/A | ISS |
| GO:0007389 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pattern specification process | SoyBase | N/A | ISS |
| GO:0008361 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell size | SoyBase | N/A | ISS |
| GO:0009664 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization | SoyBase | N/A | ISS |
| GO:0009832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0009926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin polar transport | SoyBase | N/A | ISS |
| GO:0010015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root morphogenesis | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0016132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process | SoyBase | N/A | ISS |
| GO:0040007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: growth | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0004713 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG1187 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF779 | Panther | JGI | ISS | ||
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| PF08263 | PFAM | Leucine rich repeat N-terminal domain | JGI | ISS | |
| UniRef100_D6N3G3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase n=1 Tax=Malus x domestica RepID=D6N3G3_MALDO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MUE2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUE2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g12880 not represented in the dataset |
Glyma17g12880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g08140 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g119800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g12880.1 sequence type=CDS gene model=Glyma17g12880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTTGTTCATTACTGTTGTTGTTGTTTTGTTCCTGCTGCAGCTGAGTTCGAGTGTCCGAGTGAACTCGGAGCCGACTCAGGACAAGCAAGCCCTCCTCTCTTTCCTCTCCCAAACCCCACACTCGAACCGTCTCCAATGGAACGCTTCGGAATCCGCGTGCGACTGGGTGGGCGTGAAATGCGACGCGTCACGCTCCTTCGTCTACTCGCTCCGTTTACCCGCCGTCGATTTAGTGGGTCGGGTCCCACCCGGTACACTCGGCCGCTTAACCCAGCTTCGGATCCTCAGCCTCCGCTCCAACGCCCTCACCGGCGAGATCCCTTCCGATTTCTCCAACCTCATTTTCCTCCGCAGCCTCTACCTCCAGAAGAACCAATTCTCCGGCGAGTTCCCTCCGAGTCTCACTCGCCTCACTCGCTTGGCTCGCTTGGATCTTTCCTCCAACAATTTCACCGGCCAAATCCCTTTCTCTGTTAACAACTTAACCCACCTCACTGGCCTCTTCTTAGAACGCAACCATTTCTCCGGTAAAATCCCTAGCATCACTCTCAGGCTTGTTAACTTCAATGTTTCATATAACAATCTCAACGGTTCAATCCCCGAGACACTCTCTGCGTTTCCGGAAACTTCCTTCGTCGGAAACATAGATCTCTGCGGACCGCCGTTGAAGGACTGTACTCCTTTCTTCCCGGCGCCGGCGCCGTCTCCGTCGGAGAATTCAACCCCGGTGAAGACACGTAAGAAGTCCAAGAAGCTCTCCACCGGCGCCATTGTTGCAATCGTTGTGGGGTCCGTTCTTGGCTTGGCGTTGTTGCTGCTGCTGCTGTTGCTGTGTCTCCGGCGGCGGCGAAGACAGCCCGCGAAGCCGCCGAAGGCGGTGGTGGAGGAGCATAGCGTGCCGGCGGAGGCGGGGACGTCGTCGTCGAAGGATGATATCACCGGGGGTTCGGCGGAGGTGGAGAGGAACAAGCTTGTGTTCTTCGAAGGGGGAATTTACAGTTTCGATTTGGAGGATTTGTTGAGGGCTTCGGCGGAGGTGTTGGGGAAGGGTAGCGTGGGGACTTCGTATAAGGCGGTGCTGGAGGAAGGAACCACCGTGGTGGTGAAGAGGCTGAAGGATGTTGTGGTGACGAAGAAAGAGTTCGAGACGCAAATGGAGGTTCTGGGGAATATTAAGCACGAGAATGTGGTTCCTCTCAGAGCCTTCTACTTCTCCAAGGACGAGAAATTGCTCGTTTATGATTACATGTCCGCTGGGAGCTTGTCTGCGCTGCTACACGGGAGCAGAGGGTCTGGGCGAACACCACTCGACTGGGACAGCCGAATGAAAATAGCCCTAGGAGCAGCAAGAGGGCTGACATGCCTCCATGTGGCAGGCAAGGTGGTCCACGGCAACATCAAATCTTCCAACATCCTCCTCCGGGGACCCGACCATGATGCCGGCGTTTCGGACTTCGGCCTCAACCCCTTGTTCGGAAACGGAGCCCCGTCAAACCGTGTGGCGGGATACCGGGCACCCGAAGTGGTCGAAACCCGGAAGGTGAGCTTCAAGTCCGACGTGTACAGCTTGGGAGTGTTGCTGCTGGAGCTTCTAACGGGAAAAGCGCCAAACCAAGCCTCGCTCGGGGAAGAGGGCATTGATCTTCCCAGGTGGGTTCAGTCAGTTGTGCGTGAAGAATGGACCGCAGAAGTGTTCGATGCGGAGCTCATGAGGTTCCAAAACATCGAGGAGGAGATGGTTCAACTGTTGCAAATTGCTATGGCGTGCGTTTCCGTTGTGCCGGATCAGAGGCCTAGCATGCAAGACGTGGTGCGTATGATTGAGGACATTAACCGTGGCGAGACAGATGATGGCTTGAGACAATCTTCTGATGACCCTTCCAAAGGATCCGAGGGTCACACACCACCCCCAGAGTCAAGGACTCCACCTAGGTCACTCACACCTTAA
>Glyma17g12880.1 sequence type=predicted peptide gene model=Glyma17g12880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALFITVVVVLFLLQLSSSVRVNSEPTQDKQALLSFLSQTPHSNRLQWNASESACDWVGVKCDASRSFVYSLRLPAVDLVGRVPPGTLGRLTQLRILSLRSNALTGEIPSDFSNLIFLRSLYLQKNQFSGEFPPSLTRLTRLARLDLSSNNFTGQIPFSVNNLTHLTGLFLERNHFSGKIPSITLRLVNFNVSYNNLNGSIPETLSAFPETSFVGNIDLCGPPLKDCTPFFPAPAPSPSENSTPVKTRKKSKKLSTGAIVAIVVGSVLGLALLLLLLLLCLRRRRRQPAKPPKAVVEEHSVPAEAGTSSSKDDITGGSAEVERNKLVFFEGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFETQMEVLGNIKHENVVPLRAFYFSKDEKLLVYDYMSAGSLSALLHGSRGSGRTPLDWDSRMKIALGAARGLTCLHVAGKVVHGNIKSSNILLRGPDHDAGVSDFGLNPLFGNGAPSNRVAGYRAPEVVETRKVSFKSDVYSLGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRFQNIEEEMVQLLQIAMACVSVVPDQRPSMQDVVRMIEDINRGETDDGLRQSSDDPSKGSEGHTPPPESRTPPRSLTP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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