SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G19980 | AT | Annotation by Michelle Graham. TAIR10: golgi nucleotide sugar transporter 4 | chr5:6749907-6750932 REVERSE LENGTH=341 | SoyBase | E_val: 5.00E-166 | ISS |
| GO:0015780 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide-sugar transport | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| KOG1444 | KOG | Nucleotide-sugar transporter VRG4/SQV-7 | JGI | ISS | |
| PTHR11132 | Panther | SOLUTE CARRIER FAMILY 35 | JGI | ISS | |
| UniRef100_G7JU76 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GDP-mannose transporter n=1 Tax=Medicago truncatula RepID=G7JU76_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MUE0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUE0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g12840 not represented in the dataset |
Glyma17g12840 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g119300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g12840.1 sequence type=CDS gene model=Glyma17g12840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAATGACGTGGGCGCGATTCGATTCGTGGAAGCAGCAATACTACACCACAAGCGGCGTGGTGGTAGGTTACGCAGTATGCTCCAGCCTCCTGGCCATCATCAACAAATACGCCATCACCAAATTCAACTACCCAGGCCTCTTAACCGCGCTCCAGTACCTCACCTCCGCACTCGGCGTCTACGTCTTTGGGAAATTAGGGTTTCTCCACCACGACCCCTTCACCCTCCCCACCGCCAAAAAATTCTTCCCCGCCGCCCTCGTCTTCTACCTCGCCATCTTCACCAACACCAATCTTCTCCGCCATGCCAACGTCGACACCTTCATCGTCTTCCGATCCCTCACCCCTCTCCTCGTCGCCCTCGCCGACACCGTCTTCCGCAGCCAGCCCTGCCCCTCCAACCTCACCTTCCTCTCCCTCCTCGTCATCCTCGCCGGCGCCTTCGGCTACGTCGCCACCGACTCCGCCTTCACCCTCACCGCCTACTCCTGGGCCTTCGCCTACCTCATCACCATCACCACCGAGATGGTCTACATCAAGCACATGGTCATGAGCCTCGGCCTCAACACATGGGGCTTCGTCTTCTACAACAACCTCCTCTCTCTTATGATGGCTCCCTTTTTCTCCTTCGTCACCGGCGAGAACGTCGAGATTATCGCCGCGGTTAGATCCGGCGGCCTTTTCGACCCCGCCGCCTTCTACGCCGTCTCCCTGTCTTGCCTCTTCGGCTTGCTCATTAGTTTCTTCGGGTTCGCGGCCAGGAGGGCCGTTTCCGCCACCGCGTTCACCGTCACCGGCGTGGTGAACAAGTTTCTCACTGTGGCGATCAATGTACTTATTTGGGATAAGCATGCTAGCCCCATTGGTTTGGTTTGCTTGTTTTTTACCATTGTTGGTGGGATTCTTTACCAGCAGTCTGTGACTGGGCTTGGGAGTGCTCCGGCCCAGCCCAAACAGTTGGATACTGAAAGCAACAAAGGTGGTGGCGAAGATGATGACGATGGTGATTTGACAGGTGAGAGTGATGGCTTGATTAAAGCTACTTCTATATAA
>Glyma17g12840.1 sequence type=predicted peptide gene model=Glyma17g12840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTMTWARFDSWKQQYYTTSGVVVGYAVCSSLLAIINKYAITKFNYPGLLTALQYLTSALGVYVFGKLGFLHHDPFTLPTAKKFFPAALVFYLAIFTNTNLLRHANVDTFIVFRSLTPLLVALADTVFRSQPCPSNLTFLSLLVILAGAFGYVATDSAFTLTAYSWAFAYLITITTEMVYIKHMVMSLGLNTWGFVFYNNLLSLMMAPFFSFVTGENVEIIAAVRSGGLFDPAAFYAVSLSCLFGLLISFFGFAARRAVSATAFTVTGVVNKFLTVAINVLIWDKHASPIGLVCLFFTIVGGILYQQSVTGLGSAPAQPKQLDTESNKGGGEDDDDGDLTGESDGLIKATSI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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