Glyma17g12812 - SoyBase

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Report for Sequence Feature Glyma17g12812

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9697045
stop:	9700109
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12812

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF03033	PFAM	Glycosyltransferase family 28 N-terminal domain	JGI		ISS
UniRef100_G7IBZ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sterol 3-beta-glucosyltransferase n=1 Tax=Medicago truncatula RepID=G7IBZ2_MEDTR	SoyBase	E_val: 2.00E-16	ISS
UniRef100_I1LDF5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LDF5_SOYBN	SoyBase	E_val: 1.00E-25	ISS

Expression Patterns of Glyma17g12812

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g12812 not represented in the dataset	Glyma17g12812 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g12812 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g119100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g12812

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g12812

Limit To All Plant Sequences

>Glyma17g12812.2   sequence type=transcript   gene model=Glyma17g12812   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGATTCTACTGTTGGGTATATGCCTTTTCCCTGATATAGGTAAAAGATATGATCTGGACTTTCAATCTCCTCAAAAGTCTGGACAAAATTTTTAGTCAGCAGAGGATATGATAGACTTGTGCAAGGAACTATGCTTTGCAACTGACGACTAACCTAGTAAAGATACAAAATGATGGCACTGTTGAAGTTGATATAGAAATGAGTGCATCTGTTGCTCCAGAATTGTTAGAGCTCCAATCTTTTGTCGAGTCAACAGTGAGTGGAAGTCTTAGTTCAAAATCAAAAAAATCTGTTCCATGGTTACAAATTGTCATACTTGTGGTTGGAACTAGAGGCGACGTACAACCTTTTCTGGCCATTGCAAAGAAACTTCAGATGGCATGTTTAAATTGTTTCCGCTGCACGCACGTCCCTACTCCACTAACCTCATACTCTTTGTGCTCAACTCCAATTGGTTCTTCTAGGCTAGTTTAATCTGTAATTGCAACCTCGTACGTCATTCCTTGCAGGACCATCCAGAAGAAGTTAAGGATTAAGATTCCCAAGGCCACTGGTGGTAACAAAAATGCAGAGAAAGTTTCACTTTCTTGTCAAAAACAAAGCCACTGCTAGTGCGATGCTGATCTTCGTAGATAGGTGTCCTTACGATTTTTTCCGCTCTCTAAAACAGTGTTTGTGTTTGGTTGGTTGGTGAGAAAGTTTAGGGTCTTCAAACCTAGTAGAGATTAACCTAGTAGTGTTTTTTTGGGGGGTATTAATCATAGACATTAATTTCTACAAGGGCTGACCTACCAATATAACAATTGAAAGAGCACCATGTGCACGTTGTAGGTGGCAACAAAAGTCTAGCACAACCGAAATAACGATGTTTGTCCCCGGAATAAAACCATGAGTCACTGTGAAACAAAAATTAACTCTAAGGGTAAAAAAAAAGGGAGAAAGAATTTGAGTGGCTTTATTAAGGAAGAATAAAGGAGAAAATGTTTTGAAATTCATTAGATGATTTTGCAATTTTT

>Glyma17g12812.3   sequence type=transcript   gene model=Glyma17g12812   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGATTCTACTGTTGGGTATATGCCTTTTCCCTGATATAGGTAAAAGATATGATCTGGACTTTCAATCTCCTCAAAAGTCTGGACAAAATTTTTAGTCAGCAGAGGATATGATAGACTTGTGCAAGGAACTATGCTTTGCAACTGACGACTAACCTAGTAAAGATACAAAATGATGGCACTGTTGAAGTTGATATAGAAATGAGTGCATCTGTTGCTCCAGAATTGTTAGAGCTCCAATCTTTTGTCGAGTCAACAGTGAGTGGAAGTCTTAGTTCAAAATCAAAAAAATCTGTTCCATGGTTACAAATTGTCATACTTGTGGTTGGAACTAGAGGCGACGTACAACCTTTTCTGGCCATTGCAAAGAAACTTCAGGACCATCCAGAAGAAGTTAAGGATTAAGATTCCCAAGGCCACTGGTGGTAACAAAAATGCAGAGAAAGTTTCACTTTCTTGTCAAAAACAAAGCCACTGCTAGTGCGATGCTGATCTTCGTAGATAGGTGTCCTTACGATTTTTTCCGCTCTCTAAAACAGTGTTTGTGTTTGGTTGGTTGGTGAGAAAGTTTAGGGTCTTCAAACCTAGTAGAGATTAACCTAGTAGTGTTTTTTTGGGGGGTATTAATCATAGACATTAATTTCTACAAGGGCTGACCTACCAATATAACAATTGAAAGAGCACCATGTGCACGTTGTAGGTGGCAACAAAAGTCTAGCACAACCGAAATAACGATGTTTGTCCCCGGAATAAAACCATGAGTCACTGTGAAACAAAAATTAACTCTAAGGGTAAAAAAAAAGGGAGAAAGAATTTGAGTGGCTTTATTAAGGAAGAATAAAGGAGAAAATGTTTTGAAATTCATTAGATGATTTTGCAATTTTT

>Glyma17g12812.4   sequence type=transcript   gene model=Glyma17g12812   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGATTCTACTGTTGGGTATATGCCTTTTCCCTGATATAGGTAAAAGATATGATCTGGACTTTCAATCTCCTCAAAAGTCTGGACAAAATTTTTAGTCAGCAGAGGATATGATAGACTTGTGCAAGGAACTATGCTTTGGTTTGGAACATTGCATCACATCCCCTGTTGGAACTGAGAGGAACCCACTTATAGTTGGTGATGAGATTTTTCTTTCTAGATCAATGACAGGAAAGAGGGATTCCCTAGGCAGGACACAATATTGGACAAGCTGTCTGAGAGGGCGAAGCAACTGACGACTAACCTAGTAAAGATACAAAATGATGGCACTGTTGAAGTTGATATAGAAATGAGTGCATCTGTTGCTCCAGAATTGTTAGAGCTCCAATCTTTTGTCGAGTCAACAGTGAGTGGAAGTCTTAGTTCAAAATCAAAAAAATCTGTTCCATGGTTACAAATTGTCATACTTGTGGTTGGAACTAGAGGCGACGTACAACCTTTTCTGGCCATTGCAAAGAAACTTCAGGACCATCCAGAAGAAGTTAAGGATTAAGATTCCCAAGGCCACTGGTGGTAACAAAAATGCAGAGAAAGTTTCACTTTCTTGTCAAAAACAAAGCCACTGCTAGTGCGATGCTGATCTTCGTAGATAGGTGTCCTTACGATTTTTTCCGCTCTCTAAAACAGTGTTTGTGTTTGGTTGGTTGGTGAGAAAGTTTAGGGTCTTCAAACCTAGTAGAGATTAACCTAGTAGTGTTTTTTTGGGGGGTATTAATCATAGACATTAATTTCTACAAGGGCTGACCTACCAATATAACAATTGAAAGAGCACCATGTGCACGTTGTAGGTGGCAACAAAAGTCTAGCACAACCGAAATAACGATGTTTGTCCCCGGAATAAAACCATGAGTCACTGTGAAACAAAAATTAACTCTAAGGGTAAAAAAAAAGGGAGAAAGAATTTGAGTGGCTTTATTAAGGAAGAATAAAGGAGAAAATGTTTTGAAATTCATTAGATGATTTTGCAATTTTT

Coding sequences of Glyma17g12812

Limit To All Plant Sequences

>Glyma17g12812.1   sequence type=CDS   gene model=Glyma17g12812   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGCATCTGTTGCTCCAGAATTGTTAGAGCTCCAATCTTTTGTCGAGTCAACAGTGAGTGGAAGTCTTAGTTCAAAATCAAAAAAATCTGTTCCATGGTTACAAATTGTCATACTTGTGGTTGGAACTAGAGGCGACGTACAACCTTTTCTGGCCATTGCAAAGAAACTTCAGATGGCATGTTTAAATTGTTTCCGCTGCACGCACGTCCCTACTCCACTAACCTCATACTCTTTGTGCTCAACTCCAATTGGTTCTTCTAGGCTAGTTTAA

>Glyma17g12812.2   sequence type=CDS   gene model=Glyma17g12812   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGCATCTGTTGCTCCAGAATTGTTAGAGCTCCAATCTTTTGTCGAGTCAACAGTGAGTGGAAGTCTTAGTTCAAAATCAAAAAAATCTGTTCCATGGTTACAAATTGTCATACTTGTGGTTGGAACTAGAGGCGACGTACAACCTTTTCTGGCCATTGCAAAGAAACTTCAGATGGCATGTTTAAATTGTTTCCGCTGCACGCACGTCCCTACTCCACTAACCTCATACTCTTTGTGCTCAACTCCAATTGGTTCTTCTAGGCTAGTTTAA

>Glyma17g12812.3   sequence type=CDS   gene model=Glyma17g12812   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGCATCTGTTGCTCCAGAATTGTTAGAGCTCCAATCTTTTGTCGAGTCAACAGTGAGTGGAAGTCTTAGTTCAAAATCAAAAAAATCTGTTCCATGGTTACAAATTGTCATACTTGTGGTTGGAACTAGAGGCGACGTACAACCTTTTCTGGCCATTGCAAAGAAACTTCAGGACCATCCAGAAGAAGTTAAGGATTAA

>Glyma17g12812.4   sequence type=CDS   gene model=Glyma17g12812   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGCATCTGTTGCTCCAGAATTGTTAGAGCTCCAATCTTTTGTCGAGTCAACAGTGAGTGGAAGTCTTAGTTCAAAATCAAAAAAATCTGTTCCATGGTTACAAATTGTCATACTTGTGGTTGGAACTAGAGGCGACGTACAACCTTTTCTGGCCATTGCAAAGAAACTTCAGGACCATCCAGAAGAAGTTAAGGATTAA

Predicted protein sequences of Glyma17g12812

Limit To All Plant Sequences

>Glyma17g12812.1   sequence type=predicted peptide   gene model=Glyma17g12812   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSASVAPELLELQSFVESTVSGSLSSKSKKSVPWLQIVILVVGTRGDVQPFLAIAKKLQMACLNCFRCTHVPTPLTSYSLCSTPIGSSRLV*

>Glyma17g12812.2   sequence type=predicted peptide   gene model=Glyma17g12812   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSASVAPELLELQSFVESTVSGSLSSKSKKSVPWLQIVILVVGTRGDVQPFLAIAKKLQMACLNCFRCTHVPTPLTSYSLCSTPIGSSRLV*

>Glyma17g12812.3   sequence type=predicted peptide   gene model=Glyma17g12812   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSASVAPELLELQSFVESTVSGSLSSKSKKSVPWLQIVILVVGTRGDVQPFLAIAKKLQDHPEEVKD*

>Glyma17g12812.4   sequence type=predicted peptide   gene model=Glyma17g12812   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSASVAPELLELQSFVESTVSGSLSSKSKKSVPWLQIVILVVGTRGDVQPFLAIAKKLQDHPEEVKD*

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