Glyma17g12780 - SoyBase

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Report for Sequence Feature Glyma17g12780

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9676744
stop:	9680129
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26640	AT	Annotation by Michelle Graham. TAIR10: 3-ketoacyl-CoA synthase 11 \| chr2:11330094-11331623 FORWARD LENGTH=509	SoyBase	E_val: 0	ISS
GO:0006084	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process	SoyBase	N/A	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0008610	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid biosynthetic process	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0030243	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups	SoyBase	N/A	ISS
PF08392	PFAM	FAE1/Type III polyketide synthase-like protein	JGI		ISS
PF08541	PFAM	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal	JGI		ISS
UniRef100_I1MUD9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 3-ketoacyl-CoA synthase n=1 Tax=Glycine max RepID=I1MUD9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1MUD9	UniRef	Annotation by Michelle Graham. Best UniRef hit: 3-ketoacyl-CoA synthase n=1 Tax=Glycine max RepID=I1MUD9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g12780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g12780 not represented in the dataset	Glyma17g12780 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12780

Paralog	Evidence	Comments
Glyma05g08190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g118700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g12780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g12780

Limit To All Plant Sequences

>Glyma17g12780.1   sequence type=CDS   gene model=Glyma17g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGATGCAAAGCCAGATAAACCCTTGATGGCATCTTCATCGCGAAACCTTCCTGATTTCAAGAAGTCTGTTAAGTTGAAGTATGTCAAGCTTGGTTATCATTACCTCATCACCCATGGAATGTACCTCTGCCTTTCCCCCCTTGTGGTGCTGATTGCAGCCCAGCTTTCTACCTTCTCCCTCCGAGACTTGTATGATCTTTGGGAGCATCTACAATACAACTTGATATCTGTTATTCTTTGCTTAACTCTCCTTGTTTTCCTGTCCACCCTCTACTTTCTAACTCGTCCTCGACCTGTGTACCTTGTCAATTTCTCCTGTTACAAGCCTGAAGAATCTCGGAAGTGCACGAAAAAAATATTTATAGAGCAGTCCCGGTTGACCAGTTCTTTCACGGAGGAAAATCTTGAATTCCAGCGGAAGATTCTTGAGAGATCTGGCCTTGGGGAGAACACTTACCTTCCTGAGGCCGTCCTCAACATTCCTCCCAACCCTTCAATGAAAGAAGCTAGAAAAGAAGCCGAGACCGTGATGTTTGGTGCCATTGATGAGCTTTTAGCTAAAACCGCTGTAAAGCCTAAATACATTGGAATTCTGATTGTAAATTGTAGTCTGTTCAACCCTACTCCATCACTTTCGGCAATGATTGTCAATCATTACAAGCTTCGGGGAAATATAAAGAGCTACAATCTTGGTGGGATGGGTTGCAGTGCCGGGCTTATCTCAATTGATCTTGCTAAAGATCTTCTCCAAGCCAATCCCAACTCCTATGCATTGGTCATTAGCATGGAGAATATCACGTTGAATTGGTATTTTGGAAACGATCGGTCAAAGCTTGTCTCTAATTGTTTATTTCGTATGGGAGGAGCTGCAGTTCTGCTCTCCAATAAAAGCTCGGATAGAAGAAGATCCAAATACCGATTGGTCACCACGGTTCGCACTCATAAGGGTGCTGATGAAAAGTGCTTTAGCTGTGTAACCCAAGAAGAAGATGCTAATGGCAAGGTTGGTGTTACTTTGTCAAAAGATTTGATGGCGGTTGCTGGTGATGCTTTAAAAACCAATATCACTACACTGGGGCCTCTTGTACTTCCAACATCTGAACAGCTGCTATTCTTTGCCACATTAGTAGGGAAGAAAATTTTCAAGATGAAGATCAAACCTTATATTCCAGATTTCAAACTAGCTTTTGAACACTTTTGCATCCATGCTGGTGGTAGAGCTGTTTTGGATGAACTGGAGAAAAACTTGCAGCTATCTCCTTGGCATATGGAGCCTTCAAGAATGACACTCTATCGATTCGGAAACACCTCCAGCAGTTCACTTTGGTATGAGCTGGCTTACACTGAGGCCAAAGGGAGGATCAAAAAGGGAGACAGAACATGGCAAATTGCATTCGGTTCTGGATTCAAGTGTAACAGTGCAGTGTGGAAGGCTCTCAGGACCATCAACCCTGCTAAAGAGAAAAGTCCTTGGATTGATGAGATCGACCAGTTTCCAGTCGATGTTCCTAGGGTATCTACCATTTAA

Predicted protein sequences of Glyma17g12780

Limit To All Plant Sequences

>Glyma17g12780.1   sequence type=predicted peptide   gene model=Glyma17g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTDAKPDKPLMASSSRNLPDFKKSVKLKYVKLGYHYLITHGMYLCLSPLVVLIAAQLSTFSLRDLYDLWEHLQYNLISVILCLTLLVFLSTLYFLTRPRPVYLVNFSCYKPEESRKCTKKIFIEQSRLTSSFTEENLEFQRKILERSGLGENTYLPEAVLNIPPNPSMKEARKEAETVMFGAIDELLAKTAVKPKYIGILIVNCSLFNPTPSLSAMIVNHYKLRGNIKSYNLGGMGCSAGLISIDLAKDLLQANPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAVLLSNKSSDRRRSKYRLVTTVRTHKGADEKCFSCVTQEEDANGKVGVTLSKDLMAVAGDALKTNITTLGPLVLPTSEQLLFFATLVGKKIFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSPWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRTINPAKEKSPWIDEIDQFPVDVPRVSTI*

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