Glyma17g12720 - SoyBase

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Report for Sequence Feature Glyma17g12720

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9623890
stop:	9627138
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G03500	AT	Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein \| chr2:1059926-1062259 FORWARD LENGTH=432	SoyBase	E_val: 5.00E-128	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_G7JU63	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Two-component response regulator ARR14 n=1 Tax=Medicago truncatula RepID=G7JU63_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EDDF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EDDF related cluster n=1 Tax=unknown RepID=UPI000233EDDF	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g12720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g12720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g119600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g12720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g12720

Limit To All Plant Sequences

>Glyma17g12720.1   sequence type=CDS   gene model=Glyma17g12720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCACCCTCAGAACTAAGCCTTGATTGCAAGCCTCAGAGCTATTCCTTGCTACTCAAATCATTTGGAGATCAGACTGATCAGACCTACAAGCTTGAAGAATTCCTCTCTCGCTTGGAGGAAGAACGTCTCAAGATTGATGCTTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTTCTCACCAACGCCATGGAAGCTTCAAGGCAGCAACTACAGGCCTATAAAGTAAACCATGGAACAAAGCCAGTTCTCGAAGAATTCATACCCATGAAGCACTTAGCCTCAGATCAAAGCTCAGAGAAGGCAACAAACATGTCTGACAAGGCAAATTGGATGACATCTGCACAATTATGGAGCCAAGCAAGTGAAGGAACAAAACAACAACCAACAATCACAACACCTAAAGAATCTGATATAGGCTTCAGCATAAGTCCAAAGCTGGCTCTAGACAACAAACAGAGGAACGGTGGAGGAGCCTTTCTTCCATTCTCCAAAGAAAGAAACTCTTGCCAGGGCTCTACATTGCGGCCTCTTCCTGAACTGGCTCTTGCCTATGCGGAGAAAGAAATGGAGGACAAGAAATTACGTCCAGAGGTAGAAATTAAGGGAGTTTCGTGCCAGAGTAAGAAGGAGAATTCGGGAAGTGATGGAACTGTGGTTGATCAAGGAAAAGGTGGTAGCCCAGTTGCATCGTCTCATGCAACAACAACCACAACCACTAGCAGTGCACAAACTCATAGGAAAGCTAGAAGGTGTTGGTCACCAGACCTGCACCGAAGATTTGTTAATGCCCTTCAAATGCTTGGTGGATCACAAGTGGCGACCCCAAAGCAGATAAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGAAATATAGGCTTCACACAAGAAGACCCAGTCCAAGTCCTCAAGCGGTTGGAGCAGCACCACAGCTTGTGGTCCTCGGCGGAATCTGGGTCCCACCGGAATATGCCACGGCAGCACACACAGCCACCCCTACTCTCTACGGCGCCCACCCTACCTCCCACGCGCCGCCGCCACATTACTGCGCTGCCACTCCCATGCCACAAGACTTCTACACCACGGCGCCGCCACAGCCGCTGCTTCCGCCGCCTCCGCCGCACCACAACGCTCTGCACCACCTGCACATGTACAAGGCGGCACCGCACGGCCAAGGCTCGCCGGAATCCGACGTTCCCAGCAACGGAGAGCGATCGGAGAGTATTGAGGATGGGAAGTCGGAGAGTAGCAGCTGGAAGGGGGAGAATGAAGGGGAGAGGAAAGGGATTAGTAAAGGGAGCAATGGGAGTGAGATCACTCTCAAGTTCTAG

Predicted protein sequences of Glyma17g12720

Limit To All Plant Sequences

>Glyma17g12720.1   sequence type=predicted peptide   gene model=Glyma17g12720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESPSELSLDCKPQSYSLLLKSFGDQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAYKVNHGTKPVLEEFIPMKHLASDQSSEKATNMSDKANWMTSAQLWSQASEGTKQQPTITTPKESDIGFSISPKLALDNKQRNGGGAFLPFSKERNSCQGSTLRPLPELALAYAEKEMEDKKLRPEVEIKGVSCQSKKENSGSDGTVVDQGKGGSPVASSHATTTTTTSSAQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQAVGAAPQLVVLGGIWVPPEYATAAHTATPTLYGAHPTSHAPPPHYCAATPMPQDFYTTAPPQPLLPPPPPHHNALHHLHMYKAAPHGQGSPESDVPSNGERSESIEDGKSESSSWKGENEGERKGISKGSNGSEITLKF*

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