Glyma17g12670 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g12670

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9538381
stop:	9541802
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17486	AT	Annotation by Michelle Graham. TAIR10: PPPDE putative thiol peptidase family protein \| chr4:9749992-9751201 REVERSE LENGTH=224	SoyBase	E_val: 6.00E-79	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG0324	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12378	Panther	UNCHARACTERIZED	JGI		ISS
PF05903	PFAM	PPPDE putative peptidase domain	JGI		ISS
UniRef100_A2IB52	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ethylene-responsive element-binding protein n=1 Tax=Citrus sinensis RepID=A2IB52_CITSI	SoyBase	E_val: 2.00E-106	ISS
UniRef100_C6TDS4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TDS4_SOYBN	SoyBase	E_val: 5.00E-167	ISS

Expression Patterns of Glyma17g12670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g12670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g117700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g12670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g12670

Limit To All Plant Sequences

>Glyma17g12670.2   sequence type=transcript   gene model=Glyma17g12670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAGAGGCTAGTTTAGGGAATGGAATAAAAAGGAGCAAGTGGAGCGGTGGAACTGGAAACAAACGTTGTGGCAAGACGCAACAATAGCGTTAGCAGAAGAGAGCCAAATCCGTCTTTTGACTCATAAGTAACCAACCGCTTCTTTCAATCAACTGAAAGTCTTTATGTTTTCTTAAGGTTACTGTCTGTCTCTGTTTTATATGTGGCATGGGCATGAGATGGATCTGTATTCCATCATGTCCATGGAAGAATAGTTAACTACTTTCCTTTTTTGGTGATTTCTAAGGTTCTAATTTATAATATGGGAGTGGAGGAGAACACCCCTAACTCCATTTCCACCTCACAATGCCACGAAGAACAAAGCAACAACAAAATCAACACGCATGTGCTCTTGAATGTCTACGATCTCACCCCTGTCAATAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAGTACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAGTTTTTGAAGTGGAGCCAAGGAAATGCCCTGGATTCATATATAGATGTTCCATCTCTTTGGGTCAAACCAATATGAATCCTTCTGAATTTCGTACATTTATTGAAAACATGGCTTCTGAGTATCATGGAGATACCTATCACCTTATAACTAAGAACTGCAATCATTTTACAGACGATCTCTCTTATAGATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGCTAGGTGCTTTGTGCAGCTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGTGTTAAACAGCTACCTGAATACCATGAATGCTCGGGTGTGTATATTCCAAATCCTCTTGTTCTTTGTTTATTCCAAATCAACATGTATTCTGAATGATGCATACTGATTTTCCATCTTGCTAATTTATGCAACCTTTTTGTGTCGTCTTTTTTGGGGACTGTTTTGCAGAAGATGAATTTGTTGAATCTCTTTCACCTGCCACACCCCGTGAGTCAACAGAAATAGATGAGGAGCAAGAAAAGCACCTTCTTTTGCCATCAGATAGAACTGAGGATGTTCATTTCGTTAAAGAGACGCAAGTGAAATAAGCGGTGTCTTTGAGGTGAGAAATAACACAGGCTGTCTTCGCTTTGAATATTTATCCATTTGATTTGCAGTGATTCTTTTTTCTCAAAGTTTTCTCATTCTTCCATGGCTTTCTACATTCTCTTGGGTTTGGGTTCATTCATGGAAACTGAAGAATCCATTGTTTTGTTGTGTATAAAAGGTTCTCAAATGAGGCTAATTTGTTTGTGTAATATTATTTTTATTTTTTTTGAGGGATGGAAAGTGGGGCGAGGTTTGAGGCTCACAAGTATTTGTCATGTAAAATTGTAAATGACATCAGACATCCACGTTTGAAACTGTTTTAAGTTATGAAATATTAGCCAGTTTGTTTGAGGACATGATGTAAAAAACATCTTCCCGTTAGACAATGAGTGTTCAATGTTGTTTGATGAAGTTGATATCCTGCACAACAGTAAAAGAATGAAATGACCTCTGTAAGCATGCTTGGATCAAAAAACTTTTATTCTTTCTAGAAATTTCTGTTATAAGGATAGTGAATAGCAAAGTCCTTCCATGCCATCTTTGGTGGAAAGAGGTGAAAGATGGTTGCAGCATACGAATTGGCGAATGTTCAATATGATACTTAGTATAGCTTATGGATATAATTAAATGAGATATTTTATATTTAGGAACTATATTTGTACTACAATTAGTTGAATATCATTATTTTCACAC

>Glyma17g12670.3   sequence type=transcript   gene model=Glyma17g12670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAGAGGCTAGTTTAGGGAATGGAATAAAAAGGAGCAAGTGGAGCGGTGGAACTGGAAACAAACGTTGTGGCAAGACGCAACAATAGCGTTAGCAGAAGAGAGCCAAATCCGTCTTTTGACTCATAAGTAACCAACCGCTTCTTTCAATCAACTGAAAGTCTTTATGTTTTCTTAAGGTTCTAATTTATAATATGGGAGTGGAGGAGAACACCCCTAACTCCATTTCCACCTCACAATGCCACGAAGAACAAAGCAACAACAAAATCAACACGCATGTGCTCTTGAATGTCTACGATCTCACCCCTGTCAATAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAGTACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAGTTTTTGAAGTGGAGCCAAGGAAATGCCCTGGATTCATATATAGATGTTCCATCTCTTTGGGTCAAACCAATATGAATCCTTCTGAATTTCGTACATTTATTGAAAACATGGCTTCTGAGTATCATGGAGATACCTATCACCTTATAACTAAGAACTGCAATCATTTTACAGACGATCTCTCTTATAGATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGCTAGGTGCTTTGTGCAGCTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGTGTTAAACAGCTACCTGAATACCATGAATGCTCGGAAGATGAATTTGTTGAATCTCTTTCACCTGCCACACCCCGTGAGTCAACAGAAATAGATGAGGAGCAAGAAAAGCACCTTCTTTTGCCATCAGATAGAACTGAGGATGTTCATTTCGTTAAAGAGACGCAAGTGAAATAAGCGGTGTCTTTGAGGTGAGAAATAACACAGGCTGTCTTCGCTTTGAATATTTATCCATTTGATTTGCAGTGATTCTTTTTTCTCAAAGTTTTCTCATTCTTCCATGGCTTTCTACATTCTCTTGGGTTTGGGTTCATTCATGGAAACTGAAGAATCCATTGTTTTGTTGTGTATAAAAGGTTCTCAAATGAGGCTAATTTGTTTGTGTAATATTATTTTTATTTTTTTTGAGGGATGGAAAGTGGGGCGAGGTTTGAGGCTCACAAGTATTTGTCATGTAAAATTGTAAATGACATCAGACATCCACGTTTGAAACTGTTTTAAGTTATGAAATATTAGCCAGTTTGTTTGAGGACATGATGTAAAAAACATCTTCCCGTTAGACAATGAGTGTTCAATGTTGTTTGATGAAGTTGATATCCTGCACAACAGTAAAAGAATGAAATGACCTCTGTAAGCATGCTTGGATCAAAAAACTTTTATTCTTTCTAGAAATTTCTGTTATAAGGATAGTGAATAGCAAAGTCCTTCCATGCCATCTTTGGTGGAAAGAGGTGAAAGATGGTTGCAGCATACGAATTGGCGAATGTTCAATATGATACTTAGTATAGCTTATGGATATAATTAAATGAGATATTTTATATTTAGGAACTATATTTGTACTACAATTAGTTGAATATCATTATTTTCACAC

Coding sequences of Glyma17g12670

Limit To All Plant Sequences

>Glyma17g12670.1   sequence type=CDS   gene model=Glyma17g12670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTGGAGGAGAACACCCCTAACTCCATTTCCACCTCACAATGCCACGAAGAACAAAGCAACAACAAAATCAACACGCATGTGCTCTTGAATGTCTACGATCTCACCCCTGTCAATAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAGTACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAGTTTTTGAAGTGGAGCCAAGGAAATGCCCTGGATTCATATATAGATGTTCCATCTCTTTGGGTCAAACCAATATGAATCCTTCTGAATTTCGTACATTTATTGAAAACATGGCTTCTGAGTATCATGGAGATACCTATCACCTTATAACTAAGAACTGCAATCATTTTACAGACGATCTCTCTTATAGATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGCTAGGTGCTTTGTGCAGCTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGTGTTAAACAGCTACCTGAATACCATGAATGCTCGGAAGATGAATTTGTTGAATCTCTTTCACCTGCCACACCCCGTGAGTCAACAGAAATAGATGAGGAGCAAGAAAAGCACCTTCTTTTGCCATCAGATAGAACTGAGGATGTTCATTTCGTTAAAGAGACGCAAGTGAAATAA

>Glyma17g12670.2   sequence type=CDS   gene model=Glyma17g12670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTGGAGGAGAACACCCCTAACTCCATTTCCACCTCACAATGCCACGAAGAACAAAGCAACAACAAAATCAACACGCATGTGCTCTTGAATGTCTACGATCTCACCCCTGTCAATAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAGTACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAGTTTTTGAAGTGGAGCCAAGGAAATGCCCTGGATTCATATATAGATGTTCCATCTCTTTGGGTCAAACCAATATGAATCCTTCTGAATTTCGTACATTTATTGAAAACATGGCTTCTGAGTATCATGGAGATACCTATCACCTTATAACTAAGAACTGCAATCATTTTACAGACGATCTCTCTTATAGATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGCTAGGTGCTTTGTGCAGCTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGTGTTAAACAGCTACCTGAATACCATGAATGCTCGGGTGTGTATATTCCAAATCCTCTTGTTCTTTGTTTATTCCAAATCAACATGTATTCTGAATGA

>Glyma17g12670.3   sequence type=CDS   gene model=Glyma17g12670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTGGAGGAGAACACCCCTAACTCCATTTCCACCTCACAATGCCACGAAGAACAAAGCAACAACAAAATCAACACGCATGTGCTCTTGAATGTCTACGATCTCACCCCTGTCAATAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAGTACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAGTTTTTGAAGTGGAGCCAAGGAAATGCCCTGGATTCATATATAGATGTTCCATCTCTTTGGGTCAAACCAATATGAATCCTTCTGAATTTCGTACATTTATTGAAAACATGGCTTCTGAGTATCATGGAGATACCTATCACCTTATAACTAAGAACTGCAATCATTTTACAGACGATCTCTCTTATAGATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGCTAGGTGCTTTGTGCAGCTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGTGTTAAACAGCTACCTGAATACCATGAATGCTCGGAAGATGAATTTGTTGAATCTCTTTCACCTGCCACACCCCGTGAGTCAACAGAAATAGATGAGGAGCAAGAAAAGCACCTTCTTTTGCCATCAGATAGAACTGAGGATGTTCATTTCGTTAAAGAGACGCAAGTGAAATAA

Predicted protein sequences of Glyma17g12670

Limit To All Plant Sequences

>Glyma17g12670.1   sequence type=predicted peptide   gene model=Glyma17g12670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVEENTPNSISTSQCHEEQSNNKINTHVLLNVYDLTPVNNYVYWFGFGIFHSGIEVHGKEYGFGAHDFPASGVFEVEPRKCPGFIYRCSISLGQTNMNPSEFRTFIENMASEYHGDTYHLITKNCNHFTDDLSYRLTGKQIPGWVNRLAKLGALCSCLLPESLQVTSVKQLPEYHECSEDEFVESLSPATPRESTEIDEEQEKHLLLPSDRTEDVHFVKETQVK*

>Glyma17g12670.2   sequence type=predicted peptide   gene model=Glyma17g12670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVEENTPNSISTSQCHEEQSNNKINTHVLLNVYDLTPVNNYVYWFGFGIFHSGIEVHGKEYGFGAHDFPASGVFEVEPRKCPGFIYRCSISLGQTNMNPSEFRTFIENMASEYHGDTYHLITKNCNHFTDDLSYRLTGKQIPGWVNRLAKLGALCSCLLPESLQVTSVKQLPEYHECSGVYIPNPLVLCLFQINMYSE*

>Glyma17g12670.3   sequence type=predicted peptide   gene model=Glyma17g12670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVEENTPNSISTSQCHEEQSNNKINTHVLLNVYDLTPVNNYVYWFGFGIFHSGIEVHGKEYGFGAHDFPASGVFEVEPRKCPGFIYRCSISLGQTNMNPSEFRTFIENMASEYHGDTYHLITKNCNHFTDDLSYRLTGKQIPGWVNRLAKLGALCSCLLPESLQVTSVKQLPEYHECSEDEFVESLSPATPRESTEIDEEQEKHLLLPSDRTEDVHFVKETQVK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain