Glyma17g12660 - SoyBase

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Report for Sequence Feature Glyma17g12660

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9529943
stop:	9537369
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G20170	AT	Annotation by Michelle Graham. TAIR10: RNA polymerase II transcription mediators \| chr5:6807554-6810729 REVERSE LENGTH=653	SoyBase	E_val: 0	ISS
GO:0006357	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription from RNA polymerase II promoter	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016592	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mediator complex	SoyBase	N/A	ISS
PF10156	PFAM	Subunit 17 of Mediator complex	JGI		ISS
UniRef100_F4K460	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mediator of RNA polymerase II transcription subunit 17 n=1 Tax=Arabidopsis thaliana RepID=MED17_ARATH	SoyBase	E_val: 0	ISS
UniRef100_I1MUC0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUC0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g12660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12660

Paralog	Evidence	Comments
Glyma05g08320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g117600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g12660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g12660

Limit To All Plant Sequences

>Glyma17g12660.1   sequence type=CDS   gene model=Glyma17g12660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGATGGCATGCAATTGCAAATCTCCCTTGACAAGCTACCAATCAAGCGCTTGGATTCTATTGAAGAAAATGGAATTGAACGATTCCCACTTGACGTGGATTACGATGAGAAGCGGCTCTCCCTAATTAGGCGAATTGACTTCGCTTGGGCTGTTGAGAAGGATGAGGAGAAGAAGAAGAAGAAGCAGAAGAGCTCAAAGGAGACCTCAGCTCCATGGCAATGGCAGGGCATGGTAGAAAATTTGCAGTTGGCTCATCAGGAGCTCTCTGTCATCATAGATCTCATTAACACTGTTGAAGCAAATGATGCAGTAACAGTGGCTAGCATGACAAGACCAAAACTATTACCAAATGAAGCTTTGTCTGACCTGGCTGTATCTGCAGCCACCAAGCTGCAATGTTACCGTCATGTTGGGAAATATTTCAAGCAATCTGCCAAGGCTTTTGAACAACAAGTTGCTCGGGAAGCTAGGTTTTATGGTGCCCTTATCAGGTTGCAGCAAAATTGGAAGGTTAAACGGCAACGACAGGCAGCTATTGTTCCAGGGAATGAAGGCTTCACCTTTGATCTCTTAGATAACTCATATGACCAAGCAGCTATTATTCGCTCATTGTCTATGTCCACTGTTCGAGTCAATCATGATGCAGCTGGAATGCTGGCAATAAATGTGTCTCCTGATTTATGCCATTCTCTCCAATTTGGTTTTGTTGGTGCACAATCAGATGATACCTGGAGAAAATCCAATGAAAACAAATCCCACTTTTCAGGTGAGCATAATTTGGGAGAAATGGGTGAAGAGTCCTTAAGTGATGAAGAGTGTGTTAAGAAAACGAATTCACTCCTTCGTGAAGTACATGAAGCAATTTTCAATGAACAGGTGTTTGATCTGGTGAATCGAGAAGCATTTAACACAGTTGCAGGTGTCAGTGTGACTGGAATACGGGAAAACTATTTACAATTAAGCTTAGGTCAAGGAACCTCTGTGTACTTAACACTTGTGTCCAATAGTCAAGATCATTCTACAGTTGAAGATGAACTCAATGATAATGTAGAAAATGCAATTTTACCTCTGGAATCATCTGATGGAATGAAGCGTGAAGCCAAACAGAACACCTCTAAGAAAGGGCAGTTTTCTAATTCCATCTGCTATGAGATTTATATTCAACAGATTTTTCATGAACATATATTTGGAAAAGGTGACGAAAAGGCAATTTCCTCTGGAAATCGTTTGTCTGGCGTACAGGCAAGGGATGGATCCAGTCTTCTTGGTCATTTTTTTAAATCTTTGGCTCACAGGATATTTTCAACTAAAGTTCTTGCAGAGCTGGAAAATGTGGTATGCAAGGTCCCATATCTACAGCTAATTTCTAATCCCACATGGAATTCTCGGGCTTCGTCATGGACACTCTACATGGAGGTTCCCCAATCTATTCTTCGTGGTAGCCAAACCAAAACATCAGATTATTACGAGAAAAATGCTGCCAAGCGTCAGTTTTGGACTAAGGTGGTGGTAAATGATGATTGCATCAACGTTAAAGCTGAAGGTTCTCCAAATGTTGCAGGTTTGTTCAAGGGAAAGATTGAGGAAACCCATTCAATAAACAAATATAACTGCAACTTAGCTGATCTTCCTGTGATTATTCTGCAGCAGGTTGCTAGCCAAATTATTAATTGGCTCTATCAGGAAGCTATGATGGTTGGGATAAAAGTAAATCGAGACTTCTTATGCCTATCTTTGGAGCTGAAGCAGGGTGAAACACTTGGCCTTGTTGCAAGTGTTGATCCAGAAGATAGTGAAGAGTGTATATCTTGGTGGTTGGTCATGGAGGACAGTTTTGCTGAGGAGCAAAAGCTTCATATGAGCATCACGGATGGTGCATCTGAATATAGGAAATTCCTAGGTCACTTGTCTCTTGATTTGTTATACGCAACACTGATCGACTTGGTTGGCTTGTGCAGTGGTGGAGGCGGCCAATGA

Predicted protein sequences of Glyma17g12660

Limit To All Plant Sequences

>Glyma17g12660.1   sequence type=predicted peptide   gene model=Glyma17g12660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDGMQLQISLDKLPIKRLDSIEENGIERFPLDVDYDEKRLSLIRRIDFAWAVEKDEEKKKKKQKSSKETSAPWQWQGMVENLQLAHQELSVIIDLINTVEANDAVTVASMTRPKLLPNEALSDLAVSAATKLQCYRHVGKYFKQSAKAFEQQVAREARFYGALIRLQQNWKVKRQRQAAIVPGNEGFTFDLLDNSYDQAAIIRSLSMSTVRVNHDAAGMLAINVSPDLCHSLQFGFVGAQSDDTWRKSNENKSHFSGEHNLGEMGEESLSDEECVKKTNSLLREVHEAIFNEQVFDLVNREAFNTVAGVSVTGIRENYLQLSLGQGTSVYLTLVSNSQDHSTVEDELNDNVENAILPLESSDGMKREAKQNTSKKGQFSNSICYEIYIQQIFHEHIFGKGDEKAISSGNRLSGVQARDGSSLLGHFFKSLAHRIFSTKVLAELENVVCKVPYLQLISNPTWNSRASSWTLYMEVPQSILRGSQTKTSDYYEKNAAKRQFWTKVVVNDDCINVKAEGSPNVAGLFKGKIEETHSINKYNCNLADLPVIILQQVASQIINWLYQEAMMVGIKVNRDFLCLSLELKQGETLGLVASVDPEDSEECISWWLVMEDSFAEEQKLHMSITDGASEYRKFLGHLSLDLLYATLIDLVGLCSGGGGQ*

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