Glyma17g12610 - SoyBase

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Report for Sequence Feature Glyma17g12610

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9498681
stop:	9506155
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25940	AT	Annotation by Michelle Graham. TAIR10: early nodulin-related \| chr5:9054252-9055151 REVERSE LENGTH=115	SoyBase	E_val: 5.00E-18	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03386	PFAM	Early nodulin 93 ENOD93 protein	JGI		ISS
UniRef100_A3FGC9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Early nodulin 93 protein n=1 Tax=Populus alba x Populus tremula var. glandulosa RepID=A3FGC9_9ROSI	SoyBase	E_val: 2.00E-52	ISS
UniRef100_I1MUB5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MUB5_SOYBN	SoyBase	E_val: 6.00E-68	ISS

Expression Patterns of Glyma17g12610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g12610 not represented in the dataset	Glyma17g12610 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12610

Paralog	Evidence	Comments
Glyma05g08400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma17g12610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g12610

Limit To All Plant Sequences

>Glyma17g12610.3   sequence type=transcript   gene model=Glyma17g12610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAGAGAAGTGTTGCTGCTAATTCTTCTTTTGAGAGTACTAGCTTGGCTTCTCTGGATCAAAAGTTGGCCATGGCCAAGCGCTGCTCTCATGAGGGTGTGATGGCAGGAGCCAAGGCTGCAGTTGTTGCTACTATTGCAACTGCCATTCCAACTCTGGCTAGTGTAAGGATGCTACCTTGGGCAAAAGCCAATCTCAATCACACTGCGCAAGCTCTCATAATTTCCACAGTGGCAGGAGCTGCATATTTCATAGTAGCTGACAAGACCGTTTTGGCAACTGCAAGAAAGAACTCCTTCAACCCACCCACCAATGCATGAATTCCAAATGGATAATTTGAATGTTGCATTCGGCTGCACTACATTGGGATATCTTAGCATTATGACCCAATATTGGAAGTTATCATATATGTAAATGTATTTATAATAATATAGTAGAAGGCTTTGGGTTTCAAAAGTGAGAGACCACATATATATACCAATCTATCAGTTAATTACATGAATGCAAGTTATTCACCTTTCTTTCTACAGAAGTGCATGTGTTATATACCATTGAACATATACATAAAGTTTCACCAGCAGTCATTGCATGAGCAAAACCCGTCTTTGAAATGGTGAAAACGGTTTCTATCTCTTGCAATTATTTCCCTATTGAAGATCTTGGATATTAACTTAGTAGCCGAATGGCAATTTGGACAAACACGAAGATTCTTCACGATCCTAATTGTAGTCCCCGGC

>Glyma17g12610.4   sequence type=transcript   gene model=Glyma17g12610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAACTTCAGCAACTCTTCATCCAAAGCTACTTCAGTTATTCATCTCTTTATTACTAACATTTCTTCCATTCTTAGCTTTTGTTTGTCCCATCAAATTTTTGAAGATGGCCAAGAGAAGTGTTGCTGCTAATTCTTCTTTTGAGAGTACTAGCTTGGCTTCTCTGGATCAAAAGTTGGCCATGGCCAAGCGCTGCTCTCATGAGGGTGCGATGGCAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACTGCTCAAGCTCTCATAATTTCCACAGTGGCGGGAGCAGCATATTTTATAGTAGCTCACAAGACCGTTTTGGCAACTGCAAGAAAGAACTCCTTCAACCCACCCTCCAATGCATGAATTCCAAATGGATAACTTGGATGCTGGGTTCGGCTGCACTACGTTGGGCTATGTTAGCATTAACCCAACCATGGAACTCATCACATATGTATATGTATGTATTTATAATAAAGGAG

>Glyma17g12610.5   sequence type=transcript   gene model=Glyma17g12610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCATCTCTTTATTACTAACATTTCTTCCATTCTTAGCTTTTGTTTGTCCCATCAAATTTTTGAAGATGGCCAAGAGAAGTGTTGCTGCTAATTCTTCTTTTGAGAGTACTAGCTTGGCTTCTCTGGATCAAAAGTTGGCCATGGCCAAGCGCTGCTCTCATGGTAATGTATACTTTGAGAGTGTAAAAGCATTCTATATGGTTCAGAATTATGGTCATTAATGAGTTTGCAAATTTCTCGATATCTGAATTACATGGTTTCAATTTACATTTTTTATTTGTGTGTAAACAGAGGGTGCGATGGCAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACTGCTCAAGCTCTCATAATTTCCACAGTGGCGGGAGCAGCATATTTCATTGTAGCTGACAAGACTGTCTTGGCAACTGCAAGAAAGAACTCCTTCAACCGACCCTCCAAAGCATGAATTCCAAATAGATAACTTGGATGCTGGATTCAGCTTCACCTTGGATTATCTTGGCATAAACCCGATCATCGAACTTATCATATATGTAAATGTAATTATGTATTGATAATAATGAAGAGTTTGCATTTCAATAGTGAGATGGAACATATGTACTAATTATCAGTTAATTATATGAATGCAAATCATTCACCTTAATTTCTTCT

Coding sequences of Glyma17g12610

Limit To All Plant Sequences

>Glyma17g12610.2   sequence type=CDS   gene model=Glyma17g12610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAGAGAAGTGTTGCTGCTAATTCTTCTTTTGAGAGTACTAGCTTGGCTTCTCTGGATCAAAAGTTGGCCATGGCCAAGCGCTGCTCTCATGAGGGTGCGATGGCAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACTGCTCAAGCTCTCATAATTTCCACAGTGGCGGGAGCAGCATATTTCATTGTAGCTGACAAGACTGTCTTGGCAACTGCAAGAAAGAACTCCTTCAACCGACCCTCCAAAGCATGA

>Glyma17g12610.3   sequence type=CDS   gene model=Glyma17g12610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAGAGAAGTGTTGCTGCTAATTCTTCTTTTGAGAGTACTAGCTTGGCTTCTCTGGATCAAAAGTTGGCCATGGCCAAGCGCTGCTCTCATGAGGGTGTGATGGCAGGAGCCAAGGCTGCAGTTGTTGCTACTATTGCAACTGCCATTCCAACTCTGGCTAGTGTAAGGATGCTACCTTGGGCAAAAGCCAATCTCAATCACACTGCGCAAGCTCTCATAATTTCCACAGTGGCAGGAGCTGCATATTTCATAGTAGCTGACAAGACCGTTTTGGCAACTGCAAGAAAGAACTCCTTCAACCCACCCACCAATGCATGA

>Glyma17g12610.4   sequence type=CDS   gene model=Glyma17g12610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAGAGAAGTGTTGCTGCTAATTCTTCTTTTGAGAGTACTAGCTTGGCTTCTCTGGATCAAAAGTTGGCCATGGCCAAGCGCTGCTCTCATGAGGGTGCGATGGCAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACTGCTCAAGCTCTCATAATTTCCACAGTGGCGGGAGCAGCATATTTTATAGTAGCTCACAAGACCGTTTTGGCAACTGCAAGAAAGAACTCCTTCAACCCACCCTCCAATGCATGA

>Glyma17g12610.5   sequence type=CDS   gene model=Glyma17g12610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACTGCTCAAGCTCTCATAATTTCCACAGTGGCGGGAGCAGCATATTTCATTGTAGCTGACAAGACTGTCTTGGCAACTGCAAGAAAGAACTCCTTCAACCGACCCTCCAAAGCATGA

Predicted protein sequences of Glyma17g12610

Limit To All Plant Sequences

>Glyma17g12610.2   sequence type=predicted peptide   gene model=Glyma17g12610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKRSVAANSSFESTSLASLDQKLAMAKRCSHEGAMAGAKAAVAATIATAIPTLASVRMLPWARANLNHTAQALIISTVAGAAYFIVADKTVLATARKNSFNRPSKA*

>Glyma17g12610.3   sequence type=predicted peptide   gene model=Glyma17g12610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKRSVAANSSFESTSLASLDQKLAMAKRCSHEGVMAGAKAAVVATIATAIPTLASVRMLPWAKANLNHTAQALIISTVAGAAYFIVADKTVLATARKNSFNPPTNA*

>Glyma17g12610.4   sequence type=predicted peptide   gene model=Glyma17g12610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKRSVAANSSFESTSLASLDQKLAMAKRCSHEGAMAGAKAAVAATIATAIPTLASVRMLPWARANLNHTAQALIISTVAGAAYFIVAHKTVLATARKNSFNPPSNA*

>Glyma17g12610.5   sequence type=predicted peptide   gene model=Glyma17g12610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGAKAAVAATIATAIPTLASVRMLPWARANLNHTAQALIISTVAGAAYFIVADKTVLATARKNSFNRPSKA*

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