Glyma17g12590 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g12590

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9496865
stop:	9498846
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08070	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr1:2514374-2516599 REVERSE LENGTH=741	SoyBase	E_val: 0	ISS
GO:0031425	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast RNA processing	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7JVA7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat protein n=1 Tax=Medicago truncatula RepID=G7JVA7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A711	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A711 related cluster n=1 Tax=unknown RepID=UPI000233A711	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g12590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12590

Paralog	Evidence	Comments
Glyma05g08420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g117000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g12590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g12590

Limit To All Plant Sequences

>Glyma17g12590.2   sequence type=CDS   gene model=Glyma17g12590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAAGCTCATCGAATTCTGCGCCCATTCTTCCTCGGACCTCTCCTACGTCCTCTCTCTCTTCCACTCCATCCAACACCAACACCCACACCCCCAACATCTTCATCTGGAACACCCTCATTCGCGCCCACTCCGGCCTCTACCCCAATTCCCCCACCTTCCCTTCCCTCTTCAAGTCCTGCGCCAAATCCAAAGCCGCCCATGAAGCCAAACAGCTTCACGCACATGCCCTCAAGCTCGCCCTTCACTGTCATCCACACGTCCACACTTTGATCGTTCACATGTATTCCCAAGTTGGGGAGTTACGGGATGCGTGCTTGATGTTTGATAAAATTACTCTGAGAGTCGCCGTGTCTTTCACTGCTATTATTACTGGGTATGTCTCCGAGGGCCACGCGGATGACGCTCGACGCCTTTTCGACGAAATTCCCGCCAAGGATGTGGAAGCCCTGGCTTGCTTTACACGCATGCGGGAGGCTGACGTGTCGCCGAATCAGAGCACGATGCTGAGTGTTCTTTCCGCTTGTGGCCATTTGGGGTCGCTTGAGATGGGGAAATGGATCTTTTCTTGGGTTAGAGATCGCGGGCTTGGTAAGAATCTTCAGCTTGTTAATGCACTCGTTGATTTGTATTCCAAGTGTGGTGAAATTGACACCACGCGTGAGTTGTTTGATGGGATTGAGGAAAAAGATATGATTTTAGAAAAAAACGTAAAGCCCAATGATGTAACGTTCTTGGGCGTTCTTCCGGCTTGTGCTTCCCTTGGTGCTCTTGACCTTGGCAAGTGGGTTCATGCTTATATAGATAAAAACTTGAAAGGCACGGATAATGTGAATAATGTTTCTCTTTGGACTAGTATCATCGACATGTATGCAAAGTGTGGCTGTGTTGAGGTCGCGGAACAAGTGTTTAGAAGCATTGAGCTAGCTATGAATGGACATGCAGAGAGGGCTCTTGGCCTTTTCAAAGAAATGATCAATGAGGGGTTCCAGCCCGACGATATCACGTTTGTTGGAGTATTGTCTGCTTGTACTCAAGCTGGTTTGGTGGATCTTGGACACAGATATTTCAGTTCAATGAACAAGGATTACGGGATATCACCAAAATTGCAACACTATGGTTGCATGATAGATCTTCTGGCTAGAAGTGGAAAGTTTGATGAAGCAAAGGTTTTGATGGGAAATATGGAAATGGAGCCGGATGGAGCTATTTGGGGTTCTCTGCTTAATGCTCGTAGGGTTCATGGACAGGTTGAATTCGGTGAATATGTTGCAGAACGTCTCTTTGAATTGGAGCCAGAAAATTCCGGGGCTTTCGTGCTTTTGTCAAACATATATGCAGGAGCTGGCAGATGGGATGATGTAGCAAGGATAAGAACTAAGTTAAATGACAAAGGAATGAAGAAATTCCTTGTTGGTGATAAGTTCCACCCGCAGAGTGAAAATATTTTTAGATTGCTGGATGAGGTAGATAGGCTTTTGGAGGAGACTGGGTTTGTGCCTGATACTTCTGAGGTACTCTATGATATGGATGAGGAGTGGAAGGAAGGGGCTTTGAATCAACACAGCGAGAAGTTGGCTATTGCTTTCGGTTTGATAAGCACAAAGCCGGGGACTACAATTAGGATCGTGAAGAATCTTCGTGTTTGTCCAAATTGCCATTCGGCTACTAAGTTAATATCCAAGATCTTCAATAGGGAAATAATTGCAAGAGATAGAAACCGTTTTCACCATTTCAAAGACGGGTTTTGCTCATGCAATGACTGCTGGTGA

Predicted protein sequences of Glyma17g12590

Limit To All Plant Sequences

>Glyma17g12590.2   sequence type=predicted peptide   gene model=Glyma17g12590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ASSSNSAPILPRTSPTSSLSSTPSNTNTHTPNIFIWNTLIRAHSGLYPNSPTFPSLFKSCAKSKAAHEAKQLHAHALKLALHCHPHVHTLIVHMYSQVGELRDACLMFDKITLRVAVSFTAIITGYVSEGHADDARRLFDEIPAKDVEALACFTRMREADVSPNQSTMLSVLSACGHLGSLEMGKWIFSWVRDRGLGKNLQLVNALVDLYSKCGEIDTTRELFDGIEEKDMILEKNVKPNDVTFLGVLPACASLGALDLGKWVHAYIDKNLKGTDNVNNVSLWTSIIDMYAKCGCVEVAEQVFRSIELAMNGHAERALGLFKEMINEGFQPDDITFVGVLSACTQAGLVDLGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNARRVHGQVEFGEYVAERLFELEPENSGAFVLLSNIYAGAGRWDDVARIRTKLNDKGMKKFLVGDKFHPQSENIFRLLDEVDRLLEETGFVPDTSEVLYDMDEEWKEGALNQHSEKLAIAFGLISTKPGTTIRIVKNLRVCPNCHSATKLISKIFNREIIARDRNRFHHFKDGFCSCNDCW*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain