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Report for Sequence Feature Glyma17g12571

Feature Type:gene_model
Chromosome:Gm17
Start:9484929
stop:9487070
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g12571
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G26695AT Annotation by Michelle Graham. TAIR10: Ran BP2/NZF zinc finger-like superfamily protein | chr2:11365275-11365789 FORWARD LENGTH=138 SoyBaseE_val: 2.00E-61ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR23111Panther ZINC FINGER PROTEIN JGI ISS
PF00641PFAM Zn-finger in Ran binding protein and others JGI ISS
UniRef100_G7JVA8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein-like Ser/Thr protein kinase-like protein n=1 Tax=Medicago truncatula RepID=G7JVA8_MEDTR SoyBaseE_val: 1.00E-75ISS
UniRef100_UPI000233EDDCUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EDDC related cluster n=1 Tax=unknown RepID=UPI000233EDDC SoyBaseE_val: 2.00E-92ISS

Expression Patterns of Glyma17g12571
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g12571 not represented in the dataset
Glyma17g12571 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12571
ParalogEvidenceComments
Glyma05g08440 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12571 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g116800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g12571
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma17g12571
>Glyma17g12571.2   sequence type=transcript   gene model=Glyma17g12571   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAGAATAACAAGAGAAGGCATTACAAATTTTAATCCACGTCTTCCAGTAAATTCTTCTTTTAGATTCCCGTATGAGGAAAACCATTTCTAGATTACCAGGGAAGAAAACAGGCATTCATGTCATGTCCCCCACAATAGGACTTAAAACCAGTATATATAGCCTCACAACACAAGCAACAACACACTCACCATCTTGACTCACAAGCTATTCTAAAACTACATACTTTTATAGCAAATCATTACTCGTGTGACACTTCTTCTAGTATTCTTAATTCTTCTTGAAAGGCTACATGCACATATAGTCCTTATCTGGTTGCACCGAGAATTGATGGAACCAAAAATTCTTATAATTCAAAAATTCAAGTGTGGATATTGATCAGGAAAATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGTTTGCGAGCATATAAATTTCAAGAAGAGGGAAGCATGCCAGAGTTGTGGATACCCCAAGTATGGGGGTCCTGACCCTTCAACCTACAGATACAACAGGACTGAAGCTTTAGCAGGGGACTGGTTTTGCAACTGTGGAGCTCACAACTTCGCAAGTCGATCAAACTGCTTCAGATGTGGCTCAATGAAAGATGATTACTCTTCAGGATATGGCAACAACTCTGGAGGATATGGATCTGACACTTTCCCCCCAGGATGGAAGACTGGAGACTGGCTTTGCCCAAGACATGGATGTGGAGTGCATAACTATGCCAGCAGGACAGAATGCTATATATGCAAAATGCCAAGGGATTATGGTGGTGCAGACTGAAACAAGAAATTTCACAAGACCCGCAATATCACTGATTTCTCCCTTGGCGTCTTTCTTTTCCTAACATTTTCTATCTTGCTTTTCCTATGTCAAGTTCTAGATAAATCATGGATGAAGGCCTCTGTTAGAATCATAGCAATGTTTTTTTCATTAGGAAGTAATATGGATATCCGGCTGTAATTGTTTATTGCTAGATGTACTGACAAGAAGGTTATGAAATCCATATATTTTATTTTCCA
Coding sequences of Glyma17g12571
>Glyma17g12571.1   sequence type=CDS   gene model=Glyma17g12571   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGTTTGCGAGCATATAAATTTCAAGAAGAGGGAAGCATGCCAGAGTTGTGGATACCCCAAGTATGGGGGTCCTGACCCTTCAACCTACAGATACAACAGGACTGAAGCTTTAGCAGGGGACTGGTTTTGCAACTGTGGAGCTCACAACTTCGCAAGTCGATCAAACTGCTTCAGATGTGGCTCAATGAAAGATGATTACTCTTCAGGATATGGCAACAACTCTGGAGGATATGGATCTGACACTTTCCCCCCAGGATGGAAGACTGGAGACTGGCTTTGCCCAAGACATGGATGTGGAGTGCATAACTATGCCAGCAGGACAGAATGCTATATATGCAAAATGCCAAGGGATTATGGTGGTGCAGACTGA

>Glyma17g12571.2   sequence type=CDS   gene model=Glyma17g12571   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGTTTGCGAGCATATAAATTTCAAGAAGAGGGAAGCATGCCAGAGTTGTGGATACCCCAAGTATGGGGGTCCTGACCCTTCAACCTACAGATACAACAGGACTGAAGCTTTAGCAGGGGACTGGTTTTGCAACTGTGGAGCTCACAACTTCGCAAGTCGATCAAACTGCTTCAGATGTGGCTCAATGAAAGATGATTACTCTTCAGGATATGGCAACAACTCTGGAGGATATGGATCTGACACTTTCCCCCCAGGATGGAAGACTGGAGACTGGCTTTGCCCAAGACATGGATGTGGAGTGCATAACTATGCCAGCAGGACAGAATGCTATATATGCAAAATGCCAAGGGATTATGGTGGTGCAGACTGA
Predicted protein sequences of Glyma17g12571
>Glyma17g12571.1   sequence type=predicted peptide   gene model=Glyma17g12571   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSWSGGDWMCGVCEHINFKKREACQSCGYPKYGGPDPSTYRYNRTEALAGDWFCNCGAHNFASRSNCFRCGSMKDDYSSGYGNNSGGYGSDTFPPGWKTGDWLCPRHGCGVHNYASRTECYICKMPRDYGGAD*

>Glyma17g12571.2   sequence type=predicted peptide   gene model=Glyma17g12571   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSWSGGDWMCGVCEHINFKKREACQSCGYPKYGGPDPSTYRYNRTEALAGDWFCNCGAHNFASRSNCFRCGSMKDDYSSGYGNNSGGYGSDTFPPGWKTGDWLCPRHGCGVHNYASRTECYICKMPRDYGGAD*






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