SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G19360 | AT | Annotation by Michelle Graham. TAIR10: Zinc finger (CCCH-type) family protein | chr3:6707544-6708864 FORWARD LENGTH=386 | SoyBase | E_val: 2.00E-95 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1677 | KOG | CCCH-type Zn-finger protein | JGI | ISS | |
| PTHR12547 | Panther | CCCH ZINC FINGER/TIS11-RELATED | JGI | ISS | |
| PTHR12547:SF44 | Panther | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN | JGI | ISS | |
| PF00642 | PFAM | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | JGI | ISS | |
| UniRef100_G7JVC1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCCH domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JVC1_MEDTR | SoyBase | E_val: 1.00E-96 | ISS |
| UniRef100_UPI000233EDDB | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EDDB related cluster n=1 Tax=unknown RepID=UPI000233EDDB | SoyBase | E_val: 0 | ISS |
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Glyma17g12560 not represented in the dataset |
Glyma17g12560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g08450 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g116700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g12560.2 sequence type=CDS gene model=Glyma17g12560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTTCTCTGACCATATTCCATCCTTCATGATGTCACCGCCGTCATTTTCCACAGACACGGATGCCATTGAAGTGAGGCTTCAATTTCCAATGAACAACGAATCGTTGGAGCCACATTCACCACAGGATCGACCCCCTTCGTTCAAGAGGGCAAGGACCTGTGATAACAGCCTCTCCAATGCAATGGCATGCCCTCCAAGGATGATTCAGCACCCTGCAGTTAACAAAGGAACGAGCCACATTTTCTTCAAGACCCGCATCTGTGCAAAGTTCAGAGTTGGTGCTTGTAGAAACGGCGAGAACTGCAATTTTGCACATGGGCTTGAGGACATGAGGCAGCCGCCACCAAATTGGCAAGAGCTTGTTGGGTTGCGCGGTGAGGAGCGGCCACCGATGGCGGGGGATTGGGATGATGACCAGAAAATCATACACAAGATGAAGCTGTGCAAGAAGTATTACAATGGGGAGGAATGCCCCTATGGTGATAAGTGTAGTTTTCTTCATGAAGACCCTGCCAGGTTCAGGGATGATTCGGTGAGGTACAGGGAGAGCACATCTATAAGCATTGGAACTAATGGATCCCCCAAGTCCTATGGTGATGCCTCTAATAATTTAGAAAGCAATAGGGCTGTGAATACTGGCTTAAATGTTTTCCGGGGGAATGTTAAATCTACCTATTGGAAGACTAAACTGTGCATCAAGTTTGAGACAACAGGCCACTGCCCCTTTGGGGATGACTGTCACTTTGCTCATGGGCAAGCAGAGTTACAAGTTCCTGGTGGTCGCACTGAGGCAGAAACTGCAGGTGTCAATCCAATCTCAACTAAAGCTACCATTCCAACCTTACCAAGAGCTACATCAGTTTCTTCTAATGATGCACCTCCTAGCCACAGAGCAAGTGTACCTCCAGCAAACGAAAAGGAACGAGATAAGAAGTATTTACTGAAGTGGAAAGGACACAAGAAGATCAACCGAATTTATGGTGACTGGCTTGACGATTTGCCGCTCGTTCACAACTTGCCAGGTAGAGTGGGGACCTGA
>Glyma17g12560.2 sequence type=predicted peptide gene model=Glyma17g12560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSFSDHIPSFMMSPPSFSTDTDAIEVRLQFPMNNESLEPHSPQDRPPSFKRARTCDNSLSNAMACPPRMIQHPAVNKGTSHIFFKTRICAKFRVGACRNGENCNFAHGLEDMRQPPPNWQELVGLRGEERPPMAGDWDDDQKIIHKMKLCKKYYNGEECPYGDKCSFLHEDPARFRDDSVRYRESTSISIGTNGSPKSYGDASNNLESNRAVNTGLNVFRGNVKSTYWKTKLCIKFETTGHCPFGDDCHFAHGQAELQVPGGRTEAETAGVNPISTKATIPTLPRATSVSSNDAPPSHRASVPPANEKERDKKYLLKWKGHKKINRIYGDWLDDLPLVHNLPGRVGT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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