SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G20070 | AT | Annotation by Michelle Graham. TAIR10: nudix hydrolase homolog 19 | chr5:6779893-6782308 FORWARD LENGTH=438 | SoyBase | E_val: 0 | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG3084 | KOG | NADH pyrophosphatase I of the Nudix family of hydrolases | JGI | ISS | |
| PTHR22769 | Panther | MUTT/NUDIX HYDROLASE | JGI | ISS | |
| PF00293 | PFAM | NUDIX domain | JGI | ISS | |
| PF09296 | PFAM | NADH pyrophosphatase-like rudimentary NUDIX domain | JGI | ISS | |
| PF09297 | PFAM | NADH pyrophosphatase zinc ribbon domain | JGI | ISS | |
| UniRef100_G7JVC3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nudix hydrolase n=1 Tax=Medicago truncatula RepID=G7JVC3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MUA9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUA9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g12550 not represented in the dataset |
Glyma17g12550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g08460 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g116600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g12550.1 sequence type=CDS gene model=Glyma17g12550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCATCTTTCAGTTTCTCCTCCTCCTTCCTCCTACTCTCCGTTGCTTTTCAAAATTCCCCTTCCCCCAAACGGCGTCGTCTCTAACAAGAGCTTTCTCACAAAGCACCTCCATGTCCATAAACCTTCACTCTCACGCCTTCTCCGGCAACCCTCTGCTCTCCAAATTCCCACTCCCCGGCAACCCCCTTTCGCCCTCTGCAGCTCTCGAAGCTCTCAACGCGCGAATTAGCCTAAACAACACTCACTCTTCTCCCTCCCCGAGCTTCAAGGTGCTGCCTTTCAGAAATGGGAGGCCCTTGGCTTCTTCATCGGCCGGTACCGGCGACTCGCCGCCGATTTGGGATCTGGGTTGGCTCGGCTTGGACGATCTCAGGGGTATTTTCGAGAATTCAGGTGCCCAGTTGAGCGTGGACTTGTTGGTGTATCTGAATTCGAGTTCAGAGGACGACGCCGTTTACTGGGCAATCGATGTTTCTGATAAAGTACCTGAATTGGGTAGCAACAACGCGGCGGGGTTGTGTTTTGTGGAGCTTCGAACGCTCATGGTGGCTACAGACTGGTCGGATTTGCAACTGATGGGAAACTTGGCTATTGCTGGTCATGCTAAGGCACTGCTGGAATGGCATAATTTTTCACGATTTTGTGGCCATTGTGGAGAGAAAACAGTCCCAATGGAAGCTGGGAGACGGAAGAAATGTTCAAATGATTCATGCAAGAAGAGGATATATCCACGTGTTGACCCAGTGGTCATTATGCTCGTTATTGATAGAGAGAATGACCGTGCTCTATTGGCTAAACGACCGATGCGTATAGCTCGATTGTATACCTGCTTATCAGGTTTCACAGAGCCAGGAGAAAGCTTGGAGGAAGCTGTAAGAAGAGAAACATGGGAAGAGACTGGTATTGAAGTGGGAGAAGTTGTTTACCACAGTTCTCAGCCATGGCCTGTTGCACCAAATAGCATTCCATGTCAGCTGATGGTTGGGTTCTTTGCATATGCAAAATCCCTTGAAATAACTGTGGACAAGACAGAGTTAGAAGATGCTCAGTGGTTCAGTAGAGAAGATGTAAGAAAAGCATTGACGTTTGCTAAATACAAGCAAGCCCAAAGAACTGCAGCAGAGAAGGTTGAGCAAATGTGTAAGGGACTAGAAAAGAATCGAAGCTTGGCTTCAGATCTCAATGTGGAGAGTGCTGATGAACAACACGCTTCAATAGTTGTTCCTGGACCCTTTGCGATAGCCTATCACCTTATTTCTTCTTGGGCCTTCTCAGATCAAAATGTAGTAAATGGTGTTGAATGCAATTCAAAAAACCCATCGGATCTATGA
>Glyma17g12550.1 sequence type=predicted peptide gene model=Glyma17g12550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFIFQFLLLLPPTLRCFSKFPFPQTASSLTRAFSQSTSMSINLHSHAFSGNPLLSKFPLPGNPLSPSAALEALNARISLNNTHSSPSPSFKVLPFRNGRPLASSSAGTGDSPPIWDLGWLGLDDLRGIFENSGAQLSVDLLVYLNSSSEDDAVYWAIDVSDKVPELGSNNAAGLCFVELRTLMVATDWSDLQLMGNLAIAGHAKALLEWHNFSRFCGHCGEKTVPMEAGRRKKCSNDSCKKRIYPRVDPVVIMLVIDRENDRALLAKRPMRIARLYTCLSGFTEPGESLEEAVRRETWEETGIEVGEVVYHSSQPWPVAPNSIPCQLMVGFFAYAKSLEITVDKTELEDAQWFSREDVRKALTFAKYKQAQRTAAEKVEQMCKGLEKNRSLASDLNVESADEQHASIVVPGPFAIAYHLISSWAFSDQNVVNGVECNSKNPSDL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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