Glyma17g12541 - SoyBase

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Report for Sequence Feature Glyma17g12541

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9470175
stop:	9472615
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12541

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G15410	AT	Annotation by Michelle Graham. TAIR10: aspartate-glutamate racemase family \| chr1:5299577-5300681 FORWARD LENGTH=330	SoyBase	E_val: 7.00E-96	ISS
GO:0006520	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016855	GO-mf	Annotation by Michelle Graham. GO Molecular Function: racemase and epimerase activity, acting on amino acids and derivatives	SoyBase	N/A	ISS
PF01177	PFAM	Asp/Glu/Hydantoin racemase	JGI		ISS
UniRef100_B9SEP2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Racemase and epimerase, acting on amino acids and derivatives, putative n=1 Tax=Ricinus communis RepID=B9SEP2_RICCO	SoyBase	E_val: 4.00E-112	ISS
UniRef100_G7JVC4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Medicago truncatula RepID=G7JVC4_MEDTR	SoyBase	E_val: 6.00E-173	ISS

Expression Patterns of Glyma17g12541

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g12541 not represented in the dataset	Glyma17g12541 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12541

Paralog	Evidence	Comments
Glyma05g08470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12541 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g116500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g12541

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g12541

Limit To All Plant Sequences

>Glyma17g12541.1   sequence type=CDS   gene model=Glyma17g12541   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGAGATGCTAGAAAGGGGCATATTGATGTCTGTGCAGACAATGAATCACCCTCCATTTCTTACTGGTGATGCCTTTAGAAAGAGGACTCAGACTCGGTGCAGAGGGAGAGCAAATTCAAGCACAGCTTTGCAGTTATCTTCTGATGAGAGTGGAAACTATGCAGAACCATGTACTTCCCTTCTAAGCCAACCAAACACTATTGGTGTTATAGGAGGGGTATCACTTCTATCAACTCTGATTTTCTTGGAGAAACTTGCTTGTTGGGGTTCAAGAAATGGTAAAGAATGTCCACCTTTTGTTGTTTCCAGTGATCCTGCGTTGAGCAAAATGCTTTCATTACGCGGTCCCCTCCCTTCAGCAAGGACCAGATTTGATCGTATCAAATTGAATCAGGACCTTGTGATTGAGAATTTGCGGTGCAAAAGGAACTTTCTTCAGCAGTCTGGAGCTCGGGGTTTGGCCATGCCTTGCCATCTCTCACATGCGTGGCACAGTGAAATTTCTGAGGATAGTTCACTACCCTTTCTTCATGTTGGTGATTGTGTGGCCATGGAACTCAAGAACGCCAAGTTGAAGCCAATTCATGCTGCTGGTATTGTGAGGATTGGACTGCTGACAACTGATTCAAATTTTGTAGCTAGTTATTACCAGGAGAGGCTTCAAAGTCAGGGATTCGAAGTAGTGTTGCTAGACAAAGCAACCGAAGAACATGTATTGGTTCCTGCAATGGAGGCATTGTACAGAAAGGACATAGAAGGGGCAAGGAATTTATTGAGGATTGCAATCCATGTTCTTTTGGTTAGGGCAGTGAACTTGGTGCTTCTGGCATCTGATGATTTGCTAGGGGTTCTCCCTCACAATGATCCTCTTCTAAGGAAATGTATAGACCCCATGGATGCTTTGGCCAGGTCAACTATACACTGGGCAGAAACAATGGTAAAGGTACACGAGAAGCTTTAG

Predicted protein sequences of Glyma17g12541

Limit To All Plant Sequences

>Glyma17g12541.1   sequence type=predicted peptide   gene model=Glyma17g12541   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEMLERGILMSVQTMNHPPFLTGDAFRKRTQTRCRGRANSSTALQLSSDESGNYAEPCTSLLSQPNTIGVIGGVSLLSTLIFLEKLACWGSRNGKECPPFVVSSDPALSKMLSLRGPLPSARTRFDRIKLNQDLVIENLRCKRNFLQQSGARGLAMPCHLSHAWHSEISEDSSLPFLHVGDCVAMELKNAKLKPIHAAGIVRIGLLTTDSNFVASYYQERLQSQGFEVVLLDKATEEHVLVPAMEALYRKDIEGARNLLRIAIHVLLVRAVNLVLLASDDLLGVLPHNDPLLRKCIDPMDALARSTIHWAETMVKVHEKL*

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