Report for Sequence Feature Glyma17g12541
Feature Type: gene_model
Chromosome: Gm17
Start: 9470175
stop: 9472615
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g12541
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G15410 AT
Annotation by Michelle Graham. TAIR10: aspartate-glutamate racemase family | chr1:5299577-5300681 FORWARD LENGTH=330
SoyBase E_val: 7.00E-96 ISS
GO:0006520 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process
SoyBase N/A ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0016855 GO-mf
Annotation by Michelle Graham. GO Molecular Function: racemase and epimerase activity, acting on amino acids and derivatives
SoyBase N/A ISS
PF01177 PFAM
Asp/Glu/Hydantoin racemase
JGI ISS
UniRef100_B9SEP2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Racemase and epimerase, acting on amino acids and derivatives, putative n=1 Tax=Ricinus communis RepID=B9SEP2_RICCO
SoyBase E_val: 4.00E-112 ISS
UniRef100_G7JVC4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Medicago truncatula RepID=G7JVC4_MEDTR
SoyBase E_val: 6.00E-173 ISS
Expression Patterns of Glyma17g12541
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g12541
Paralog Evidence Comments
Glyma05g08470 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g12541 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g116500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g12541
Coding sequences of Glyma17g12541
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g12541.1 sequence type=CDS gene model=Glyma17g12541 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTAGAGATGCTAGAAAGGGGCATATTGATGTCTGTGCAGACAATGAATCACCCTCCATTTCTTACTGGTGATGCCTTTAGAAAGAGGACTCAGACTCGGTGCAGAGGGAGAGCAAATTCAAGCACAGCTTTGCAGTTATCTTCTGATGAGAGTGGAAACTATGCAGAACCATGTACTTCCCTTCTAAGCCAACCAAACACTATTGGTGTTATAGGAGGGGTATCACTTCTATCAACTCTGATTTTCTTGGAGAAACTTGCTTGTTGGGGTTCAAGAAATGGTAAAGAATGTCCACCTTTTGTTGTTTCCAGTGATCCTGCGTTGAGCAAAATGCTTTCATTACGCGGTCCCCTCCCTTCAGCAAGGACCAGATTTGATCGTATCAAATTGAATCAGGACCTTGTGATTGAGAATTTGCGGTGCAAAAGGAACTTTCTTCAGCAGTCTGGAGCTCGGGGTTTGGCCATGCCTTGCCATCTCTCACATGCGTGGCACAGTGAAATTTCTGAGGATAGTTCACTACCCTTTCTTCATGTTGGTGATTGTGTGGCCATGGAACTCAAGAACGCCAAGTTGAAGCCAATTCATGCTGCTGGTATTGTGAGGATTGGACTGCTGACAACTGATTCAAATTTTGTAGCTAGTTATTACCAGGAGAGGCTTCAAAGTCAGGGATTCGAAGTAGTGTTGCTAGACAAAGCAACCGAAGAACATGTATTGGTTCCTGCAATGGAGGCATTGTACAGAAAGGACATAGAAGGGGCAAGGAATTTATTGAGGATTGCAATCCATGTTCTTTTGGTTAGGGCAGTGAACTTGGTGCTTCTGGCATCTGATGATTTGCTAGGGGTTCTCCCTCACAATGATCCTCTTCTAAGGAAATGTATAGACCCCATGGATGCTTTGGCCAGGTCAACTATACACTGGGCAGAAACAATGGTAAAGGTACACGAGAAGCTTTAG
Predicted protein sequences of Glyma17g12541
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g12541.1 sequence type=predicted peptide gene model=Glyma17g12541 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLEMLERGILMSVQTMNHPPFLTGDAFRKRTQTRCRGRANSSTALQLSSDESGNYAEPCTSLLSQPNTIGVIGGVSLLSTLIFLEKLACWGSRNGKECPPFVVSSDPALSKMLSLRGPLPSARTRFDRIKLNQDLVIENLRCKRNFLQQSGARGLAMPCHLSHAWHSEISEDSSLPFLHVGDCVAMELKNAKLKPIHAAGIVRIGLLTTDSNFVASYYQERLQSQGFEVVLLDKATEEHVLVPAMEALYRKDIEGARNLLRIAIHVLLVRAVNLVLLASDDLLGVLPHNDPLLRKCIDPMDALARSTIHWAETMVKVHEKL*