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Report for Sequence Feature Glyma17g12520

Feature Type:gene_model
Chromosome:Gm17
Start:9455386
stop:9457409
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g12520
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G23880AT Annotation by Michelle Graham. TAIR10: F-box and associated interaction domains-containing protein | chr3:8622061-8623155 REVERSE LENGTH=364 SoyBaseE_val: 5.00E-24ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF00646PFAM F-box domain JGI ISS
UniRef100_G7IYP6UniRef Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein n=1 Tax=Medicago truncatula RepID=G7IYP6_MEDTR SoyBaseE_val: 4.00E-73ISS
UniRef100_I1MUA6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MUA6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g12520
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g12520 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g116300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g12520
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g12520
>Glyma17g12520.2   sequence type=CDS   gene model=Glyma17g12520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATGGTTGTTGGTGGTCTTCCACGCGCTGCTCCAGTACTTGCTGAGGATCTCAGCGTGGAAATTCTGTCATGGCTCCCTGTCAAGGTTCTCATTCGATTCAAGTGCGTTTCCAAGACTTGGAATTCCCTCATCTTTCATCCTATGTTGGTTAAATTGCACCTTGAAAGGTCCTCGAAAAACACCCACACCCTATTAAAGTTCATAGACATCAAATGCGAAAACTATTACGCATATCCCTGGGGCGCATTCTGCTCCATACGCTCTTTACTCGAGAACCCCTCATCCACTATTGATGACGGTTGCCACTACTTTAAAAAAGACTGTTACTTTTACGTTGGTTCCTGCAATGGCTTGGTCTGCTTGCATGATTATTCTTCCGATGAACAATGGGTCCGATTTTGGAACCCGGCCACAAGGATCATGTCCGAGGATTCGCCACACTTACGTCTCCATTCCGGCTGTTACAACGCAGGACCCAATTCTGTGGAGTGGTTTTTAGGGTTTGGGTACGATGATTGGAGTGACACGTACAAGGTGGTGGTAATCCTTTCCAATACTAAAACACATGAAATGGAGGTGAGTGTTCACTGCATGGGTGACACTGACACTTGCTGGAGAAATATTTTAACTTGTCCTTGGTTTCTCATTCTGGGACAAGTTGGACGGTTTGTGAGTGGCAGTATTAACTGGATCACTTGCGGGTCTACTGTCAATGGATTCTTAGTTTTTTCATGCGATCTAAAGAACGAGACATGCAGATATTTGTCCGCGCCTGATGCTCCTTTTGAAATCCCTATAGCTTTGCCTTCACTTGGGGTTTTGAAGGGTTGCCTTTGTGCTTCTTTTAATCAAAAGAGCCATTTTGTTGTTTGGATAATGAGGGAGTTTGGAGTTGAGACGTCTTGGACTCAGTTGCTGAATGTTAGTTATCAACATCTTCAATTGAATCCAATTCATGGCTATATAAATATTACGATTTTGTACGTGTCTGAAGATGAAGATGTCTTTTTTCTGGCAAGCCATCAAGATGCGGAGTTTATTCTTTATGATCAGAGGAATAACAGAATAAGCCTAGCAGTTAAGGCTAGAAGTGATTTTATTATTTTTTATTTCAAGACATAA
Predicted protein sequences of Glyma17g12520
>Glyma17g12520.2   sequence type=predicted peptide   gene model=Glyma17g12520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMVVGGLPRAAPVLAEDLSVEILSWLPVKVLIRFKCVSKTWNSLIFHPMLVKLHLERSSKNTHTLLKFIDIKCENYYAYPWGAFCSIRSLLENPSSTIDDGCHYFKKDCYFYVGSCNGLVCLHDYSSDEQWVRFWNPATRIMSEDSPHLRLHSGCYNAGPNSVEWFLGFGYDDWSDTYKVVVILSNTKTHEMEVSVHCMGDTDTCWRNILTCPWFLILGQVGRFVSGSINWITCGSTVNGFLVFSCDLKNETCRYLSAPDAPFEIPIALPSLGVLKGCLCASFNQKSHFVVWIMREFGVETSWTQLLNVSYQHLQLNPIHGYINITILYVSEDEDVFFLASHQDAEFILYDQRNNRISLAVKARSDFIIFYFKT*






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