Report for Sequence Feature Glyma17g12500
Feature Type: gene_model
Chromosome: Gm17
Start: 9448093
stop: 9448392
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g12500
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G20100 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:6790153-6790494 FORWARD LENGTH=113
SoyBase E_val: 4.00E-15 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_C6T549 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T549_SOYBN
SoyBase E_val: 1.00E-65 ISS
Expression Patterns of Glyma17g12500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g12500
Paralog Evidence Comments
Glyma13g23760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g12500 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g116100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g12500
Coding sequences of Glyma17g12500
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g12500.1 sequence type=CDS gene model=Glyma17g12500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACTGAGTTGCAAAGGTCAGTAACATCATTCAGAAGACAAGGGTCTTCGGGATTGGTTTGGGATGACAAATTCATCGCTGGAATTGAGAATCAGAACAAACAAGAAAGTGGTGATGATGGATCAAGTCCCTCGTTGCAGCGAAGCAGATCAGCGGGGGCACCACCTTATCGGACGGTCAACGTTGCACCACAAGCCATGGACCCTCCTTCTCCCAAGCTAGCAACTTGTGGCTTCTGTGCTCTCTTTCGGAAACCGGTTTCTGCCAAACCCAACAAATCTAAAAGACGTACTAGGTGA
Predicted protein sequences of Glyma17g12500
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g12500.1 sequence type=predicted peptide gene model=Glyma17g12500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTELQRSVTSFRRQGSSGLVWDDKFIAGIENQNKQESGDDGSSPSLQRSRSAGAPPYRTVNVAPQAMDPPSPKLATCGFCALFRKPVSAKPNKSKRRTR*