SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G20110 | AT | Annotation by Michelle Graham. TAIR10: Dynein light chain type 1 family protein | chr5:6791542-6793253 REVERSE LENGTH=209 | SoyBase | E_val: 4.00E-53 | ISS |
| GO:0007017 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule-based process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005875 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: microtubule associated complex | SoyBase | N/A | ISS |
| GO:0003777 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity | SoyBase | N/A | ISS |
| KOG3430 | KOG | Dynein light chain type 1 | JGI | ISS | |
| PTHR11886 | Panther | DYNEIN LIGHT CHAIN | JGI | ISS | |
| PTHR11886:SF9 | Panther | CYTOPLASMIC DYNEIN LIGHT CHAIN | JGI | ISS | |
| PF01221 | PFAM | Dynein light chain type 1 | JGI | ISS | |
| UniRef100_G7JVC8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dynein light chain n=1 Tax=Medicago truncatula RepID=G7JVC8_MEDTR | SoyBase | E_val: 2.00E-118 | ISS |
| UniRef100_UPI000233EDD8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EDD8 related cluster n=1 Tax=unknown RepID=UPI000233EDD8 | SoyBase | E_val: 7.00E-139 | ISS |
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Glyma17g12491 not represented in the dataset |
Glyma17g12491 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g23750 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g116000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g12491.1 sequence type=CDS gene model=Glyma17g12491 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTAACCAAGACAAGCAACACAAGAGAGGGTTCATGTACATTTACAAAGGTGGCACAGGAAACCAGAGAAAGAAAGAGTTGGAGCATGGTGTGGGACAGGAGAAGAAGTCAAATTCACGCAGTTGGTTGAACAGGATTTCAAGAACTCGAATTTTTAATGATGGCCACAGAGACTTGGACATTGGAACAAGAGGAGAAGGAGAATTTGTTGAGGCAAGGAAATCAATGTCTTGCTTGGATTTAGGAACACCAGCAGGAGGGTATGTTGAGGGGAGAAAATCGGTGTCTTTCATAGAAGCGGCAGCATCACCAGCAGCAGCCATAGGAAGCATAGTTGAGGAGGGAAGAAAATCAGTGTCCCACATCGAGAAGAACTTTGCAGTAGAGGGAATGGTTGAAGCACGAAAGTCGGTGTCCCACATCGAAACGTTGTCCTCTGTGATTGCGTATCTTCAAGTTAAGGTTTTGGTCTCGGACATGCCAACCTTCATGCAAGTGCATGCCTTTCGTTGTGCGAGAAGGACATATGATAGCTTGGAGAAGTTTAGCGCAAAACTCATCGCTCATAACATAAAGAAGGAATTTGACAAAGCGTATGGTCCGGTCTGGCATTGCATTGTAGGCTCAAATTTTGGTTCATTTGTGACACATTCAACGGGGTGTTTTCTTTATTTTTCAATGGAAAATTTATATATACTACTGTTCAAGACCAAAGTTAAGAAGGCGTTGGATTAA
>Glyma17g12491.1 sequence type=predicted peptide gene model=Glyma17g12491 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MANQDKQHKRGFMYIYKGGTGNQRKKELEHGVGQEKKSNSRSWLNRISRTRIFNDGHRDLDIGTRGEGEFVEARKSMSCLDLGTPAGGYVEGRKSVSFIEAAASPAAAIGSIVEEGRKSVSHIEKNFAVEGMVEARKSVSHIETLSSVIAYLQVKVLVSDMPTFMQVHAFRCARRTYDSLEKFSAKLIAHNIKKEFDKAYGPVWHCIVGSNFGSFVTHSTGCFLYFSMENLYILLFKTKVKKALD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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