SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g12481

Feature Type:gene_model
Chromosome:Gm17
Start:9434055
stop:9434853
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g12481
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G80160AT Annotation by Michelle Graham. TAIR10: Lactoylglutathione lyase / glyoxalase I family protein | chr1:30151101-30151930 FORWARD LENGTH=167 SoyBaseE_val: 3.00E-47ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0046482GO-bp Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004462GO-mf Annotation by Michelle Graham. GO Molecular Function: lactoylglutathione lyase activity SoyBaseN/AISS
PTHR10374Panther LACTOYLGLUTATHIONE LYASE JGI ISS
PTHR10374:SF0Panther LACTOYLGLUTATHIONE LYASE (GLYOXALASE I) JGI ISS
PF00903PFAM Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JGI ISS
UniRef100_B9RV37UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lactoylglutathione lyase, putative n=1 Tax=Ricinus communis RepID=B9RV37_RICCO SoyBaseE_val: 1.00E-50ISS
UniRef100_C6SWK3UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SWK3_SOYBN SoyBaseE_val: 7.00E-73ISS

Expression Patterns of Glyma17g12481
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g12481 not represented in the dataset
Glyma17g12481 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12481
ParalogEvidenceComments
Glyma13g23740 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12481 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g115900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g12481
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g12481
>Glyma17g12481.1   sequence type=CDS   gene model=Glyma17g12481   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAATCCCCTGCAACTCAAGTCATTGAATCATATCTCAATTGTGTGTGCATCAGTGGAGAAATCCGTTGATTTTTACGTGAATGTTCTTGGGTTTTCTCCTATTAAGAGACCTAGTTCATTAGACTTCAATGGGGCATGGTTATTCAATTATGGCATTGGAATACACCTTCTTCAATCAGAAGACCCAGAAGGCATGCCCAAGCTTGTTCCAATTAATCCTAAGGACAACCACATTTCTTTCCAACAGCGGTGGAAAAAGACTGCAGCAAATGAAGATAGAGTACGTGAAGAACAGAATGGCATGATGATTGAAATCTGCAACTGTGACAACATCCCTGTAGTACCTTTACCAGAGGACAAAGTATGGTCATGCTCACGCTTCAATTGCAATATTCAAAATCGCCAGCAGCAGATTTAA
Predicted protein sequences of Glyma17g12481
>Glyma17g12481.1   sequence type=predicted peptide   gene model=Glyma17g12481   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANPLQLKSLNHISIVCASVEKSVDFYVNVLGFSPIKRPSSLDFNGAWLFNYGIGIHLLQSEDPEGMPKLVPINPKDNHISFQQRWKKTAANEDRVREEQNGMMIEICNCDNIPVVPLPEDKVWSCSRFNCNIQNRQQQI*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo