Glyma17g12460 - SoyBase

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Report for Sequence Feature Glyma17g12460

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9418067
stop:	9421240
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58570	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr3:21657099-21660352 FORWARD LENGTH=646	SoyBase	E_val: 0	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008026	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity	SoyBase	N/A	ISS
KOG0335	KOG	ATP-dependent RNA helicase	JGI		ISS
PTHR24031	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24031:SF56	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00270	PFAM	DEAD/DEAH box helicase	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
UniRef100_G7JCV9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DEAD-box ATP-dependent RNA helicase n=1 Tax=Medicago truncatula RepID=G7JCV9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0001D62D0E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001D62D0E related cluster n=1 Tax=unknown RepID=UPI0001D62D0E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g12460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12460

Paralog	Evidence	Comments
Glyma13g23720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g115700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g12460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g12460

Limit To All Plant Sequences

>Glyma17g12460.1   sequence type=CDS   gene model=Glyma17g12460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGTGGTCTTATGCCTCGCACTATGTCCCTCCACAACACCGCACTAACAGCTTCCAAACCTTAACCGATGATTCAACCAGCCGTGGTGGCGCTAGACCACGTGACGGTGGCCGCGGTGGTTCCGGCAGCCGTGGGTTTTCTCGTCCCCGCATTCCTTCTAACCGGTTACCCGTGGAGGAACCACAAGACGGCAGCGACGCTATTAACTTCGACGCGTACGAGTCGGTACCGGTGGAGGCGAGTGGGAAGGACGTGCCACCGCCGGTGAACACCTTCAATGAAGCGGACTTGGACGAAGGTTTAAAGAGGAACATCGACCGATGCAAGTATGTGAAACCCACGCCGGTTCAGCGCCACGCGATTCCCATCGCGAGTGCGGGACGCGACCTAATGGCGTGCGCACAGACCGGTTCGGGCAAAACGGCAGCGTTTTGTTTTCCCATTATATCTGGGATTTTGAAGGGTCGTTCTCTTTCTGGGTTTTCATCAATGCCGGCTCGTGGTGCCGCTGTTGCATACCCCACTGCACTTATTCTGTCTCCTACCAGGGAGTTATCATGCCAGATACGCGATGAAGCGAATAAATATGCGCATCAAACTGGAGTGAAGGTTGTTGTTGCCTACGGTGGGGCTCCTATTACTCAGCAGCTGCGCCTTATGGAGAAAGGTGTTGATATATTGGTTGCAACTCCTGGGCGTTTGGTGGATATTATTGAAAGAGAAAGGGTTTCGTTGACAAAGATAAAGTATCTTGCTTTGGATGAGGCTGATCGTATGTTGGACATGGGTTTTGAACACCAAATACGCAAGATTGTGGAGCAAATGCAGATGCCCTCGCCAGGTATTAGGCAAACATTGTTGTTTAGTGCCACGTTTCCTAATGATATACAGAAGCTAGCATCGGACTTTTTATCCAACTACATATTCCTGTCTGTTGGAAGGGTTGGATCGAGTACTGAACTGATTGTGCAGAAGATTGAGCTTGTACAGGATATGGACAAAAGGGACCATCTTATTAATCATCTGCGACGTCAAAAGGTGCATGGGGCAAATGGGAAGCATGCTTTGACTCTTGTATTTGTTGAAACCAAAAGAGGAGCGGATGTTTTAGAAGGTTGGTTGTTGAGAAGTGGCTTTTCAGCTGTTGCCATACATGGTGACAAAGTTCAAATGGAAAGGGAACGGGCTTTAAGATCATTCAAATCTGGTTTGACTCCCATTTTGGTTGCAACTGATGTTGCTTCACGGGGATTGGATATCCCGCATGTGGCTCATGTTATAAACTTTGACTTGCCTAGAGACATTGATAACTACGTACATAGAATTGGAAGAACAGGCCGTGCAGGCAAATCTGGGTTAGCCACTGCCTTCTTCAGCGACAAGAATAGCCCTATTGCAAAGGCTCTTATTGGACTCTTGCAGGAAGCAAACCAAGAAGTTCCATCTTGGCTCAACCAATATGCTACTGAGGGTTCATCATCTGGTGGGGGTGGTCGTGGCTATGAAGCTCAGCGTTACCGCAGTGGCAGTTATGGTGGTCATGATTTCCGGAATGTCACTGAACCTGAGGTGCAGAATTACAACTGCTACAATACCAATGGCAATGCAGTTCAGTTTGTAGAGTCTTACACTGCTGATGATGCCTCTTACGTTGATACCTCCTATGACATCCAAAACTCCAATATAGATTGCTCTTTTGAATGTTTACATATAGCTTCTTCCGGCAGTTATAATCACACTGATTCTTGTGAGTTGAATGGAGGTGGTGGTAGGGTTGAAGAAGATGGGCCACGCGGTTATGCATCTATTGTTGCCACTGGATGGGATTAG

Predicted protein sequences of Glyma17g12460

Limit To All Plant Sequences

>Glyma17g12460.1   sequence type=predicted peptide   gene model=Glyma17g12460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLWSYASHYVPPQHRTNSFQTLTDDSTSRGGARPRDGGRGGSGSRGFSRPRIPSNRLPVEEPQDGSDAINFDAYESVPVEASGKDVPPPVNTFNEADLDEGLKRNIDRCKYVKPTPVQRHAIPIASAGRDLMACAQTGSGKTAAFCFPIISGILKGRSLSGFSSMPARGAAVAYPTALILSPTRELSCQIRDEANKYAHQTGVKVVVAYGGAPITQQLRLMEKGVDILVATPGRLVDIIERERVSLTKIKYLALDEADRMLDMGFEHQIRKIVEQMQMPSPGIRQTLLFSATFPNDIQKLASDFLSNYIFLSVGRVGSSTELIVQKIELVQDMDKRDHLINHLRRQKVHGANGKHALTLVFVETKRGADVLEGWLLRSGFSAVAIHGDKVQMERERALRSFKSGLTPILVATDVASRGLDIPHVAHVINFDLPRDIDNYVHRIGRTGRAGKSGLATAFFSDKNSPIAKALIGLLQEANQEVPSWLNQYATEGSSSGGGGRGYEAQRYRSGSYGGHDFRNVTEPEVQNYNCYNTNGNAVQFVESYTADDASYVDTSYDIQNSNIDCSFECLHIASSGSYNHTDSCELNGGGGRVEEDGPRGYASIVATGWD*

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