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Report for Sequence Feature Glyma17g12430

Feature Type:gene_model
Chromosome:Gm17
Start:9407766
stop:9409458
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g12430
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20160AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr5:6804075-6805102 REVERSE LENGTH=128 SoyBaseE_val: 8.00E-76ISS
GO:0000478GO-bp Annotation by Michelle Graham. GO Biological Process: endonucleolytic cleavage involved in rRNA processing SoyBaseN/AISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0042254GO-bp Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
KOG3387 KOG 60S ribosomal protein 15.5kD/SNU13, NHP2/L7A family (includes ribonuclease P subunit p38), involved in splicing JGI ISS
PTHR23105Panther 60S RIBOSOMAL PROTEIN L10A - RELATED JGI ISS
PTHR23105:SF11Panther RIBOSOMAL PROTEIN L7AE JGI ISS
PF01248PFAM Ribosomal protein L7Ae/L30e/S12e/Gadd45 family JGI ISS
UniRef100_B9SEQ9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein l7ae, putative n=1 Tax=Ricinus communis RepID=B9SEQ9_RICCO SoyBaseE_val: 5.00E-86ISS
UniRef100_I1MU97UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MU97_SOYBN SoyBaseE_val: 7.00E-87ISS

Expression Patterns of Glyma17g12430
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12430
ParalogEvidenceComments
Glyma13g23690 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12430 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g115400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g12430
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g12430
>Glyma17g12430.1   sequence type=CDS   gene model=Glyma17g12430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGCGGATGCCCAACTCTCAATAACCATACTAGACCTTGTTCAACAAGCTGCCAACTACAAGCAGCTCAAAAAAGGTGCTAATGAAGCCACTAAAACCCTGAACAGGGGTATCTCTGAATTTGTTGTGATGGCTGCTGATACTGAGCCCCTTGAGATTCTTCTACATCTTCCTCTACTTGCTGAGGATAAGAATGTGCCCTACGTGTTTGTCCCTTCAAAACAAGCACTTGGACGTGCATGTGGGGTCACCAGGCCAGTGATTGCTTGTTCTGTGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAGGATGCTATTGAGAAGCTTTTAATCTGA
Predicted protein sequences of Glyma17g12430
>Glyma17g12430.1   sequence type=predicted peptide   gene model=Glyma17g12430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTGEAVNPKAYPLADAQLSITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI*






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