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Report for Sequence Feature Glyma17g12420

Feature Type:gene_model
Chromosome:Gm17
Start:9392941
stop:9397790
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g12420
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G26690AT Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein | chr2:11347347-11350916 REVERSE LENGTH=577 SoyBaseE_val: 0ISS
GO:0006857GO-bp Annotation by Michelle Graham. GO Biological Process: oligopeptide transport SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0030003GO-bp Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis SoyBaseN/AISS
GO:0070838GO-bp Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
KOG1237 KOG H+/oligopeptide symporter JGI ISS
PTHR11654Panther OLIGOPEPTIDE TRANSPORTER-RELATED JGI ISS
PTHR11654:SF37Panther OLIGOPEPTIDE TRANSPORTER-RELATED JGI ISS
PF00854PFAM POT family JGI ISS
UniRef100_G7JCX8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nitrate transporter n=1 Tax=Medicago truncatula RepID=G7JCX8_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233E213UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E213 related cluster n=1 Tax=unknown RepID=UPI000233E213 SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g12420
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12420
ParalogEvidenceComments
Glyma13g23680 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12420 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g115300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g12420
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g12420
>Glyma17g12420.1   sequence type=CDS   gene model=Glyma17g12420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGAAAAAATGAGTTGGACAGTTGCAGACGCCGTGGACTATAAAGGCTTCCCTGCAGACAGGTCCAAAACAGGTGGTTGGGTACCCGCAGCTCTTATTTTAGGGATTGAAATCGTGGAGAGGCTCTCCACCATGGGGATTGCAGTGAACCTGGTAACATACATGATCTCAATCATGCATCTGCCAAGCTCAACTGCAGCCAACACTGTGACTGACTTTATGGGCACATCATTTCTCCTGTGTTTGCTGGGAGGTTTTCTAGCAGATTCCTTCCTTGGCAGATACAAGACAATTGGAATCTTTGCTTCAATACAAACACTGGGTACTGCTACATTAGCAATCTCAACAAAATTGCCAGGGCTACGTCCACCACCTTGCCATGCTAACAGTGACAGCTGCAAACAAGCCAACGGATTCCAAATGGGAATCTTGTACTTGTCACTGTACCTTATTGCACTAGGAACTGGTGGCCTCAAGTCCAGTGTTTCAGGATTTGGTTCTGACCAATTCGATGAGAAAGATGAGAAGGAGAAATCGCAAATGGCCTATTTTTTCAACAGGTTTTTCTTCTTCATCAGTTTTGGAACTCTGGCAGCTGTCACAGTACTTGTCTATCTGCAAGATGAAGTGAGTCGCAGCTTGGCGTATGGAATATGTTCTGTCTCTATGATCATAGCCATTATCGTGTTCTTATCAGGAACTAAAAGATACAGATACAAGAGGAGTTTGGGGAGCCCCATTGTCCACATTTTCCAAGTTATTGCTGCATCAATAAAGAAAAGAAAGATGCAACTCCCATACAATGTTGGTTCTTTGTATGAGGACACTCCCGAGGCTTCAAGAATAGAGCACACCGAACAGTTCCGTTTCTTGGAGAAAGCAGCCATTGTGGCAGAAGATGATTTTGAGACAAATTTATGTGGTTCTGGACCAAACCCATGGAAATTATGCTCACTAACAAGGGTAGAGGAGGTGAAAATGATGGTGAGACTTCTGCCAGTGTGGGCCACAACCATCATATTTTGGACCATTTACGCACAGTTGATCACCTTTTCAGTTGAGCAAGCCTCCACCATGGAAAGGAATATTGGGAGTTTCCAAATCCCTGCAGGCTCTGTCACAGTCTTTTTTGTGGCTGCAATACTAATCACTCTGGCTGTCTATGACCGACTCATCATGCCCCTTTGGAAAAAGTGGAACGGCAAACCAGGTTTCACTGACCTACAAAGGATAGCAATTGGGCTTGTATTTTCCATTTTTGGAATGGCGGCTGCTTCTGTATGCGAGAGGAAACGGTTATCCGTTGCAAAAAGTGTTAGTGGCGGCAACCAAGCAACAACAACACTTCCTATAAGCGTTTTCCTTCTGATCCCACAGTTCTTCTTGGTGGGTTCTGGTGAAGCATTCATATACACAGGCCAACTTGATTTCTTCATAACACGGTCACCAAAAGGAATGAAAACCATGAGCACTGGTCTCTTTCTCACAACTTTGTCTCTCGGTTTCTTCTTCAGCAGTTTCCTTGTCTCGGTTGTTAAGAAAGTTACTGGGACAAGAGATGGGCAAGGGTGGCTAGCAGACAGCATAAACAAGGGCAGGCTCGATTTGTTCTATGCACTGCTTACCATACTTAGTTTCGTTAACTTTGCAGCATTTGCGGTATGTGCAGTTTGGTTCAAACCTAAGAAACCTAAACAACCAGCTGCTATGCAAATGGGGCCAGTTAATGGGTCCACAGCAGAGGAAAAGTGCTGA
Predicted protein sequences of Glyma17g12420
>Glyma17g12420.1   sequence type=predicted peptide   gene model=Glyma17g12420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEKMSWTVADAVDYKGFPADRSKTGGWVPAALILGIEIVERLSTMGIAVNLVTYMISIMHLPSSTAANTVTDFMGTSFLLCLLGGFLADSFLGRYKTIGIFASIQTLGTATLAISTKLPGLRPPPCHANSDSCKQANGFQMGILYLSLYLIALGTGGLKSSVSGFGSDQFDEKDEKEKSQMAYFFNRFFFFISFGTLAAVTVLVYLQDEVSRSLAYGICSVSMIIAIIVFLSGTKRYRYKRSLGSPIVHIFQVIAASIKKRKMQLPYNVGSLYEDTPEASRIEHTEQFRFLEKAAIVAEDDFETNLCGSGPNPWKLCSLTRVEEVKMMVRLLPVWATTIIFWTIYAQLITFSVEQASTMERNIGSFQIPAGSVTVFFVAAILITLAVYDRLIMPLWKKWNGKPGFTDLQRIAIGLVFSIFGMAAASVCERKRLSVAKSVSGGNQATTTLPISVFLLIPQFFLVGSGEAFIYTGQLDFFITRSPKGMKTMSTGLFLTTLSLGFFFSSFLVSVVKKVTGTRDGQGWLADSINKGRLDLFYALLTILSFVNFAAFAVCAVWFKPKKPKQPAAMQMGPVNGSTAEEKC*






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