Glyma17g12400 - SoyBase

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Report for Sequence Feature Glyma17g12400

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9370473
stop:	9374420
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15050	AT	Annotation by Michelle Graham. TAIR10: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein \| chr5:4871820-4873454 REVERSE LENGTH=434	SoyBase	E_val: 0	ISS
GO:0007020	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule nucleation	SoyBase	N/A	ISS
GO:0016051	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008375	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acetylglucosaminyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG0799	KOG	Branching enzyme	JGI		ISS
PTHR19297	Panther	GLYCOSYLTRANSFERASE 14 FAMILY MEMBER	JGI		ISS
PTHR19297:SF2	Panther	GALACTOSYLTRANSFERASE-RELATED	JGI		ISS
PF02485	PFAM	Core-2/I-Branching enzyme	JGI		ISS
UniRef100_G7JCW1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Xylosyltransferase n=1 Tax=Medicago truncatula RepID=G7JCW1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MU95	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MU95_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g12400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12400

Paralog	Evidence	Comments
Glyma13g23660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g115100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g12400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g12400

Limit To All Plant Sequences

>Glyma17g12400.1   sequence type=CDS   gene model=Glyma17g12400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACCAACAACAAACAACAGCAGCAGAAGAAGAAGTGGTTTATGCCACTGGTTCTGTCTCTACTACTGTCCACCCTGCTCATACTTTTTTCCATCTTCGTCTCCTCCGATTCCTCCTCTCTGCTCTACCTCTACCGTACACGTGGCAGACTCGAGGAGCCTCGTTTCGTGGAGTCAAAGCTGAGGCTGTCCGCCACGTCATCCAGCGATTCCGTTCCCAGGATCGCGTACCTGATCTCGGGGTCAATGGGCGATGGCGACACTCTGAAGAGAACCCTCAAGGCCCTTTACCATCCCAGGAACCAATACGCTGTGCACTTGGACCTCGAAGCTTCTTCTCAAGAAAGATTGGAGCTTGCAAACTTTGTGAAGAACGACCCTCTCTTTGCGGAAGTGGGCAATGTTAGGATGATTGTTAAGGCCAACTTGGTTACTTATAGAGGACCCACTATGGTCACTAATACCCTCCACGCTGCTGCCATTCTGTTAAAGGAAGGTGGACTCTGGGATTGGTTCATCAATCTCAGCGCTTCCGATTACCCTTTGATCACTCAAGATGATCTGCTGCATACACTGTCATCAATTCCAAGACACCTTAACTTTATTGAGCACACCAGTGATATTGGCTGGAAGGAAGATCAGAGAGCCAAGCCTGTTATCATTGATCCAGCTCTTTATAGTGTCAATAAGTCTGATTTATTTTGGGTGACTGAGAAAAGAAATGTTCCCACCGCATATAAGCTGTTTACAGGTTCTGCATGGATGATGCTCTCTCGCCAATTTGTTGAATATTTGTTATGGGGATGGGATAACTTGCCTAGAATTGTCTTGATGTATTATGCCAACTTTCTATCCTCCCCTGAAGGGTATTTTCACACTGTCATCTGCAATTCTGAGGAGTTCCGAAACACTACTGTGAACCATGACCTCCACTTCATATCATGGGACAACCCTCCAAAACAACATCCACATTTCCTTACAATTGATAACTACGAGCAAATGGTTGACAGCAATGCTCCGTTTGCTCGAAAATTTGGCAGGAATGAACCACTCTTGGATAAGATTGATAATGAACTCTTGAGACGAAATGAACATGGTTATGTGCCTGGCAGGTGGTTCGACCAAGCAAATCCTAACATCACCAAACCATATTCTGCCATAAGAAATATCACTGAACTTAAGCCTGGCCCTGGAGCAGAAAGGCTTAAACGCCTTATCAATGGTTTGTTATCATCAGAAGATTTTCACACTAAGCAGTGTTCTTGA

Predicted protein sequences of Glyma17g12400

Limit To All Plant Sequences

>Glyma17g12400.1   sequence type=predicted peptide   gene model=Glyma17g12400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METNNKQQQQKKKWFMPLVLSLLLSTLLILFSIFVSSDSSSLLYLYRTRGRLEEPRFVESKLRLSATSSSDSVPRIAYLISGSMGDGDTLKRTLKALYHPRNQYAVHLDLEASSQERLELANFVKNDPLFAEVGNVRMIVKANLVTYRGPTMVTNTLHAAAILLKEGGLWDWFINLSASDYPLITQDDLLHTLSSIPRHLNFIEHTSDIGWKEDQRAKPVIIDPALYSVNKSDLFWVTEKRNVPTAYKLFTGSAWMMLSRQFVEYLLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNSEEFRNTTVNHDLHFISWDNPPKQHPHFLTIDNYEQMVDSNAPFARKFGRNEPLLDKIDNELLRRNEHGYVPGRWFDQANPNITKPYSAIRNITELKPGPGAERLKRLINGLLSSEDFHTKQCS*

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