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Report for Sequence Feature Glyma17g12400

Feature Type:gene_model
Chromosome:Gm17
Start:9370473
stop:9374420
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15050AT Annotation by Michelle Graham. TAIR10: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:4871820-4873454 REVERSE LENGTH=434 SoyBaseE_val: 0ISS
GO:0007020GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule nucleation SoyBaseN/AISS
GO:0016051GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0008375GO-mf Annotation by Michelle Graham. GO Molecular Function: acetylglucosaminyltransferase activity SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
KOG0799 KOG Branching enzyme JGI ISS
PTHR19297Panther GLYCOSYLTRANSFERASE 14 FAMILY MEMBER JGI ISS
PTHR19297:SF2Panther GALACTOSYLTRANSFERASE-RELATED JGI ISS
PF02485PFAM Core-2/I-Branching enzyme JGI ISS
UniRef100_G7JCW1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Xylosyltransferase n=1 Tax=Medicago truncatula RepID=G7JCW1_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MU95UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MU95_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g23660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g115100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma17g12400.1   sequence type=CDS   gene model=Glyma17g12400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACCAACAACAAACAACAGCAGCAGAAGAAGAAGTGGTTTATGCCACTGGTTCTGTCTCTACTACTGTCCACCCTGCTCATACTTTTTTCCATCTTCGTCTCCTCCGATTCCTCCTCTCTGCTCTACCTCTACCGTACACGTGGCAGACTCGAGGAGCCTCGTTTCGTGGAGTCAAAGCTGAGGCTGTCCGCCACGTCATCCAGCGATTCCGTTCCCAGGATCGCGTACCTGATCTCGGGGTCAATGGGCGATGGCGACACTCTGAAGAGAACCCTCAAGGCCCTTTACCATCCCAGGAACCAATACGCTGTGCACTTGGACCTCGAAGCTTCTTCTCAAGAAAGATTGGAGCTTGCAAACTTTGTGAAGAACGACCCTCTCTTTGCGGAAGTGGGCAATGTTAGGATGATTGTTAAGGCCAACTTGGTTACTTATAGAGGACCCACTATGGTCACTAATACCCTCCACGCTGCTGCCATTCTGTTAAAGGAAGGTGGACTCTGGGATTGGTTCATCAATCTCAGCGCTTCCGATTACCCTTTGATCACTCAAGATGATCTGCTGCATACACTGTCATCAATTCCAAGACACCTTAACTTTATTGAGCACACCAGTGATATTGGCTGGAAGGAAGATCAGAGAGCCAAGCCTGTTATCATTGATCCAGCTCTTTATAGTGTCAATAAGTCTGATTTATTTTGGGTGACTGAGAAAAGAAATGTTCCCACCGCATATAAGCTGTTTACAGGTTCTGCATGGATGATGCTCTCTCGCCAATTTGTTGAATATTTGTTATGGGGATGGGATAACTTGCCTAGAATTGTCTTGATGTATTATGCCAACTTTCTATCCTCCCCTGAAGGGTATTTTCACACTGTCATCTGCAATTCTGAGGAGTTCCGAAACACTACTGTGAACCATGACCTCCACTTCATATCATGGGACAACCCTCCAAAACAACATCCACATTTCCTTACAATTGATAACTACGAGCAAATGGTTGACAGCAATGCTCCGTTTGCTCGAAAATTTGGCAGGAATGAACCACTCTTGGATAAGATTGATAATGAACTCTTGAGACGAAATGAACATGGTTATGTGCCTGGCAGGTGGTTCGACCAAGCAAATCCTAACATCACCAAACCATATTCTGCCATAAGAAATATCACTGAACTTAAGCCTGGCCCTGGAGCAGAAAGGCTTAAACGCCTTATCAATGGTTTGTTATCATCAGAAGATTTTCACACTAAGCAGTGTTCTTGA

>Glyma17g12400.1   sequence type=predicted peptide   gene model=Glyma17g12400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METNNKQQQQKKKWFMPLVLSLLLSTLLILFSIFVSSDSSSLLYLYRTRGRLEEPRFVESKLRLSATSSSDSVPRIAYLISGSMGDGDTLKRTLKALYHPRNQYAVHLDLEASSQERLELANFVKNDPLFAEVGNVRMIVKANLVTYRGPTMVTNTLHAAAILLKEGGLWDWFINLSASDYPLITQDDLLHTLSSIPRHLNFIEHTSDIGWKEDQRAKPVIIDPALYSVNKSDLFWVTEKRNVPTAYKLFTGSAWMMLSRQFVEYLLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNSEEFRNTTVNHDLHFISWDNPPKQHPHFLTIDNYEQMVDSNAPFARKFGRNEPLLDKIDNELLRRNEHGYVPGRWFDQANPNITKPYSAIRNITELKPGPGAERLKRLINGLLSSEDFHTKQCS*







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