Glyma17g12380 - SoyBase

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Report for Sequence Feature Glyma17g12380

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9361117
stop:	9365710
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF11317	PFAM	Protein of unknown function (DUF3119)	JGI		ISS
UniRef100_I1MU93	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MU93_SOYBN	SoyBase	E_val: 5.00E-131	ISS
UniRef100_Q00Z75	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WGS project CAID00000000 data, contig chromosome 11 (Fragment) n=1 Tax=Ostreococcus tauri RepID=Q00Z75_OSTTA	SoyBase	E_val: 2.00E-20	ISS

Expression Patterns of Glyma17g12380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12380

Paralog	Evidence	Comments
Glyma13g23640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g114900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g12380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g12380

Limit To All Plant Sequences

>Glyma17g12380.2   sequence type=CDS   gene model=Glyma17g12380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGCAGTCTTCTGTCCGTACACCACTTTCTTCCCTCCCAAAATTGGTTCTTGAGTGGTTTCAGGACTTCTATTTGTGGACAAGTTGTGTGCAATCCAAGTTTTTGTGGGAGACAAATAACTAGAAGCCATGGAAACCGTCTTGTTGTTCACTCACTGCTTGGAAGGAAGGTGAGGTCCGTGAAGAGCAGAGAGACTGTGATTCCTGAACCAGATTACAGGATTCCAATTGTGCTACTTGGTATAGCTGGTGGATTGGCTTACACAGATAATTTGGTACCTGCAGTACCTGTTACCACTAGAGTGACATTTGTCTTTGATGATGAGGCTCTGGAGGTAAAGATAGGTGAACAGCTCCAGGAATCGGGTGAGAATGCTTTTGTGGGAGGAAAAAAATGCTGGAAGTACTCAACATTTGTTAATTGGGAATTCTGGTGGCCAAACTTCCCTATCTTGGTTTACTTCAAGGAGACACAAACAAAGCCTGAGGGACAAATTCATTGCTTTCCCATAATATTTAATGGGAAGCAGCTTTATGACGTTATGGTGGAAAGAGCTGGCCCTTCAAAAACTAGTGGACCAAAAGAATCCTGA

Predicted protein sequences of Glyma17g12380

Limit To All Plant Sequences

>Glyma17g12380.2   sequence type=predicted peptide   gene model=Glyma17g12380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSLLSVHHFLPSQNWFLSGFRTSICGQVVCNPSFCGRQITRSHGNRLVVHSLLGRKVRSVKSRETVIPEPDYRIPIVLLGIAGGLAYTDNLVPAVPVTTRVTFVFDDEALEVKIGEQLQESGENAFVGGKKCWKYSTFVNWEFWWPNFPILVYFKETQTKPEGQIHCFPIIFNGKQLYDVMVERAGPSKTSGPKES*

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