Glyma17g12340 - SoyBase

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Report for Sequence Feature Glyma17g12340

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9345385
stop:	9347666
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26660	AT	Annotation by Michelle Graham. TAIR10: SPX domain gene 2 \| chr2:11338932-11340703 FORWARD LENGTH=287	SoyBase	E_val: 5.00E-99	ISS
GO:0006817	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphate ion transport	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1161	KOG	Protein involved in vacuolar polyphosphate accumulation, contains SPX domain	JGI		ISS
PTHR10783	Panther	XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR	JGI		ISS
PTHR10783:SF5	Panther	XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR IDS-4	JGI		ISS
PF03105	PFAM	SPX domain	JGI		ISS
UniRef100_E5D6S6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SPX domain-containing protein 2 n=1 Tax=Phaseolus vulgaris RepID=E5D6S6_PHAVU	SoyBase	E_val: 2.00E-134	ISS
UniRef100_I1MU90	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MU90_SOYBN	SoyBase	E_val: 1.00E-180	ISS

Expression Patterns of Glyma17g12340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12340

Paralog	Evidence	Comments
Glyma13g23580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g114700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g12340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g12340

Limit To All Plant Sequences

>Glyma17g12340.2   sequence type=CDS   gene model=Glyma17g12340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATTCGGGAAGAGCCTGAGCAGCCAGATCGAGAAAACCCTGCCAGAGTGGCGCGACAAGTTCCTCTCCTACAAGGAGCTCAAGAAGAAGCTCAAGCAATTCGACCCTCCCGCCCCCGCCTCCGCCGCCGATGAACGCCCCGGCAAGCGCCTCAAGACCGACGCCGGCAACGCCGACGCCGACGCCGTTTCCGACGCCTCCGACATGTCGAAGGAGGAGAGCGACTTCCGGAACCTGCTGGAGAATGAACTCGACAAATTCAACACCTTCTTCGTTGAGAAGGAGGAAGAGTACATTATCAGACTCAAGAATTATACCATTTCTAAGTGCAATGGAAAAATCAAGTACCAGCTAAATCAAGAATTGTATGTCCTCAATGTTCGAATTAAATATGATGCTGATCTTCATAAATATTCCAGTTGCATAGTATACAAAGGGCTAGTGAAAATACTTAAAAAGTATGACAAGAGAACCGGTGCTCTCATTCGCTTGCCCTTCATTCAGAAGGTCTTGCAACAACCTTTCTTTACCACTGACTTGCTCTACAAGCTTGTAAAGGAGTGTGAAACAATGCTGGACCACCTTTTCCCTGTGAATGATCCTGCTCCAGTTTCCACTGAGACAACTCCCCAAGCTGAAGGTTTTGATCCTTCAACTTCAACCACTACCAAGAGTGATGGTTTGGTGATTCCGAAGGAATTAGCTGAGATCGAGTACATGGAGAGCCTTTATATGAAGAGTACTGTATCAGCATTGCATGTTTTGCAGGAAATTAGAAGTGGAAGCTCAACAGTTAGCATGTTTTCATTGCCACCGTTGAAGATAAGTGGTTCAGAAGAAGAAACATGGAAGAAAATCCCTGTTCTGGAACAAGCAGCCAAGTAA

Predicted protein sequences of Glyma17g12340

Limit To All Plant Sequences

>Glyma17g12340.2   sequence type=predicted peptide   gene model=Glyma17g12340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFGKSLSSQIEKTLPEWRDKFLSYKELKKKLKQFDPPAPASAADERPGKRLKTDAGNADADAVSDASDMSKEESDFRNLLENELDKFNTFFVEKEEEYIIRLKNYTISKCNGKIKYQLNQELYVLNVRIKYDADLHKYSSCIVYKGLVKILKKYDKRTGALIRLPFIQKVLQQPFFTTDLLYKLVKECETMLDHLFPVNDPAPVSTETTPQAEGFDPSTSTTTKSDGLVIPKELAEIEYMESLYMKSTVSALHVLQEIRSGSSTVSMFSLPPLKISGSEEETWKKIPVLEQAAK*

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