Glyma17g12290 - SoyBase

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Report for Sequence Feature Glyma17g12290

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9313661
stop:	9315778
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G20180	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L36 \| chr5:6811312-6811910 FORWARD LENGTH=103	SoyBase	E_val: 2.00E-28	ISS
GO:0006354	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG4122	KOG	Mitochondrial/chloroplast ribosomal protein L36	JGI		ISS
PTHR18804	Panther	FAMILY NOT NAMED	JGI		ISS
PF00444	PFAM	Ribosomal protein L36	JGI		ISS
UniRef100_C6SZA6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein n=1 Tax=Glycine max RepID=C6SZA6_SOYBN	SoyBase	E_val: 7.00E-65	ISS
UniRef100_C6SZA6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Ribosomal protein n=1 Tax=Glycine max RepID=C6SZA6_SOYBN	SoyBase	E_val: 7.00E-65	ISS

Expression Patterns of Glyma17g12290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g12290 not represented in the dataset	Glyma17g12290 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12290

Paralog	Evidence	Comments
Glyma13g23530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g114100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g12290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g12290

Limit To All Plant Sequences

>Glyma17g12290.4   sequence type=transcript   gene model=Glyma17g12290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAATCATAGCTTGTTGTTGGTTTTTCCCTTCTTGAGAACTCAGAAGCCATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGATAGTTAAGCGCCGGGGACGAATCTATGTGATTTGCTCTGGGAACCCTAAGCACAAGCAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGCGCGACCAGGTCTGATTTCTAATACCCCTCAAAGGCACAGCTTGTCTATGTTGTATGGATGGAGGGTGGGATTGGCCTCTATTCTGTCTATGAAGTAGCAAAAATAATTAGTAACCTCGAACATTACGAGTAATAAGTGCGAAGAGATTGATAATCAACGGTTATGGATTAAGGCCTCCATCTTGCTCTTGCCTTTCTTTGTATTGGTTGATGAAGATTTTTTCAAACTTTTTTTTTGTTTTGTGTGATATTTGATTTACATCACTCGGGGATTTTGTTTCTCCGTTAAAAATATGGTCAACAGATTGTAACCTCGTAGTAGATTTGGTGTTCACTGTTAAGTGAATCAGCGGAGCACAATCGGTAGCGCCCTCCTCCTTATTATCACTTGACCAAAAGATGAGAATTTTTTGCAACGTATTATCATCTATTATATCTATATATTACGCAGCTTTTGCTACCAAGT

>Glyma17g12290.5   sequence type=transcript   gene model=Glyma17g12290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACCCTCTCTCTTTACCTCTCAGACACTACAAGCCATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGATAGTTAAGCGCCGGGGACGAATCTATGTGATTTGCTCTGGGAACCCTAAGCACAAGCAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGCGCGACCAGGTCTGATTTCTAATACCCCTCAAAGGCACAGCTTGTCTATGTTGTATGGATGGAGGGTGGGATTGGCCTCTATTCTGTCTATGAAGTAGCAAAAATAATTAGTAACCTCGAACATTACGAGTAATAAGTGCGAAGAGATTGATAATCAACGGTTATGGATTAAGGCCTCCATCTTGCTCTTGCCTTTCTTTGTATTGGTTGATGAAGATTTTTTCAAACTTTTTTTTTGTTTTGTGTGATATTTGATTTACATCACTCGGGGATTTTGTTTCTCCGTTAAAAATATGGTCAACAGATTGTAACCTCGTAGTAGATTTGGTGTTCACTGTTAAGTGAATCAGCGGAGCACAATCGGTAGCGCCCTCCTCCTTATTATCACTTGACCAAAAGATGAGAATTTTTTGCAACGTATTATCATCTATTATATCTATATATTACGCAGCTTTTGCTACCAAGT

Coding sequences of Glyma17g12290

Limit To All Plant Sequences

>Glyma17g12290.3   sequence type=CDS   gene model=Glyma17g12290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTAGTGGGCCTGATCCAAGCCGAAAATCCACTCGCCTTTGTTGCCCCCAAAACCTTTCTTTCTGCTTCTCCCATCCATCGCTTCTGGAATCTCGTCATAGTTCTTTCAGTTGCCATATACCCTCTCTCTTTACCTCTCAGACACTACAAGAAGCCATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGATAGTTAAGCGCCGGGGACGAATCTATGTGATTTGCTCTGGGAACCCTAAGCACAAGCAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGCGCGACCAGGTCTGATTTCTAATACCCCTCAAAGGCACAGCTTGTCTATGTTGTATGGATGGAGGGTGGGATTGGCCTCTATTCTGTCTATGAAGTAG

>Glyma17g12290.4   sequence type=CDS   gene model=Glyma17g12290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGATAGTTAAGCGCCGGGGACGAATCTATGTGATTTGCTCTGGGAACCCTAAGCACAAGCAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGCGCGACCAGGTCTGATTTCTAATACCCCTCAAAGGCACAGCTTGTCTATGTTGTATGGATGGAGGGTGGGATTGGCCTCTATTCTGTCTATGAAGTAG

>Glyma17g12290.5   sequence type=CDS   gene model=Glyma17g12290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGATAGTTAAGCGCCGGGGACGAATCTATGTGATTTGCTCTGGGAACCCTAAGCACAAGCAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGCGCGACCAGGTCTGATTTCTAATACCCCTCAAAGGCACAGCTTGTCTATGTTGTATGGATGGAGGGTGGGATTGGCCTCTATTCTGTCTATGAAGTAG

Predicted protein sequences of Glyma17g12290

Limit To All Plant Sequences

>Glyma17g12290.3   sequence type=predicted peptide   gene model=Glyma17g12290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSGPDPSRKSTRLCCPQNLSFCFSHPSLLESRHSSFSCHIPSLFTSQTLQEAMKVRSSVKKMCEFCQIVKRRGRIYVICSGNPKHKQRQGMATFASEGPSRPVSSETSSWKMGIKPAQIARPGLISNTPQRHSLSMLYGWRVGLASILSMK*

>Glyma17g12290.4   sequence type=predicted peptide   gene model=Glyma17g12290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKVRSSVKKMCEFCQIVKRRGRIYVICSGNPKHKQRQGMATFASEGPSRPVSSETSSWKMGIKPAQIARPGLISNTPQRHSLSMLYGWRVGLASILSMK*

>Glyma17g12290.5   sequence type=predicted peptide   gene model=Glyma17g12290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKVRSSVKKMCEFCQIVKRRGRIYVICSGNPKHKQRQGMATFASEGPSRPVSSETSSWKMGIKPAQIARPGLISNTPQRHSLSMLYGWRVGLASILSMK*

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