Glyma17g12260 - SoyBase

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Report for Sequence Feature Glyma17g12260

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9278525
stop:	9279535
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80133	AT	Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:30143868-30144255 REVERSE LENGTH=99	SoyBase	E_val: 9.00E-10	ISS
UniRef100_G7JE34	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: EPIDERMAL PATTERNING FACTOR-like protein n=1 Tax=Medicago truncatula RepID=G7JE34_MEDTR	SoyBase	E_val: 2.00E-32	ISS
UniRef100_I1MU83	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MU83_SOYBN	SoyBase	E_val: 3.00E-74	ISS

Expression Patterns of Glyma17g12260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g12260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g113800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g12260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g12260

Limit To All Plant Sequences

>Glyma17g12260.1   sequence type=CDS   gene model=Glyma17g12260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCGCCAAAAGTATACCTCAATGGACTAAAAACTTCAGTGACTCTGATTCTCATAATTTCTCTCACGTTATTTCCTTCTAATTCAGTAGGGTCAGCTTCAGCGAAAGATGGTGGCAAGGTTCTGAAGCAAAAGAAATTAGTATTGGGGTCAAGGCCTCCAAAGTGTGTCAACAAGTGCTTGAGCTGCAAGCCATGCATGGCTGCTTTGGTTATCTCTCCTCACCACAGGGATGGTCACACTCACAAGGCAAAAACAGTTCAAAGAGACGAAGGCTACTATCTTCTCTCATGGAAATGCAAATGCGGTAACAAGTTCTTTCAGCCCTGA

Predicted protein sequences of Glyma17g12260

Limit To All Plant Sequences

>Glyma17g12260.1   sequence type=predicted peptide   gene model=Glyma17g12260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSPKVYLNGLKTSVTLILIISLTLFPSNSVGSASAKDGGKVLKQKKLVLGSRPPKCVNKCLSCKPCMAALVISPHHRDGHTHKAKTVQRDEGYYLLSWKCKCGNKFFQP*

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