Glyma17g12250 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g12250

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9268600
stop:	9276393
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G35410	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr5:13634933-13638062 FORWARD LENGTH=446	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009705	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
KOG0583	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24344	Panther	SERINE/THREONINE-PROTEIN KINASE CDS1	JGI		ISS
PTHR24344:SF45	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF03822	PFAM	NAF domain	JGI		ISS
UniRef100_Q53UK3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ser/Thr protein kinase n=1 Tax=Lotus japonicus RepID=Q53UK3_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_UPI00018C6A7F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00018C6A7F related cluster n=1 Tax=unknown RepID=UPI00018C6A7F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g12250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12250

Paralog	Evidence	Comments
Glyma13g23500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g113700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g12250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g12250

Limit To All Plant Sequences

>Glyma17g12250.2   sequence type=transcript   gene model=Glyma17g12250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTTCTTGTATGGGCTAAAAAGAAGCGTAAGATGATGGTGACATTGGCAACTTGTTGCCATACATAGACACACCATCTTATCTTATTCTTTTTGGGAGGAGCTTACCTTAACTCCAATTCTAGAATAAAATTCCTATTCTTCTTCTCATTTCAACTCTTTGCAATTGCGATCTTTCATTCCTTTTTTTTACTCTTGGTAAGCGTAGTTCGGTGTTGGAGAACCAGCTTCCAGTTCCAGAATACTGCTGAACAGAGTTCGGCTTCGCTTTATTGGGACTCAGTTGTGTTTCTACTAGGTTATCTTCTCTGAATTGCAAATGAATGATCGTTGAAAAACCATGAAGAAGGTGAGGAGAAAGATCGGCAAGTATGAGGTGGGTCGGACTATTGGCGAAGGCACCTTCGCCAAGGTTAAGTTCGCAAGAAACTCGGAGACAGGGGAGAGCGTGGCTATTAAAGTCATGGCTAAGACCACCATTCTCCAGCACAGAATGGTTGAACAGATTAAAAGAGAGATATCCATTATGAAGATTGTCAGGCATCCTAATATAGTTAGATTGCACGAGGTTTTGGCTAGCCAGACCAAGATCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATTCTGGGAAAGCTTTCTGAAAATGAATCTAGGCACTACTTTCAACAACTTATAGACGCAGTTGATCATTGTCATAGAAAGGGTGTGTACCATAGAGACTTGAAGCCTGAAAATCTTCTTCTTGATGCTTACGGAAATTTGAAGGTTTCTGACTTTGGATTGAGTGCATTGACTAAACAGGGTGCTGACCTTCTTCACACCACTTGTGGGACCCCAAACTATGTTGCCCCTGAGGTACTCAGCAATAGAGGATATGATGGTGCAGCAGCTGATGTTTGGTCATGTGGAGTCATCCTATATGTTCTAATGGCTGGATATCTTCCTTTTGAGGAGGCAGACCTTCCAACACTGTATAGAAGGATCAATGCTGCAGAATTTGTTTGCCCATTCTGGTTTTCTGCTGACACAAAGTCATTCATACAAAAAATTCTGGATCCTAATCCTAAAACACGGGTGAAAATTGAAGAAATAAGGAAAGATCCATGGTTCAAGAAAAACTATTTTCCTGTCAAACTCGGGGAAGATGAGCAAGTGAATTTGGATGATGTTCGGGCTGTTTTTGATGATATTGAGGACCAGTATGTTTCTGAAAGGTCAGAAATTACTGAGGGAGGTCCTCTGATAATGAATGCATTTGAGATGATTGCTTTATCACAAGGGTTGAATCTTTCACCACTATTTGATAGGCATCAGGATTATGTAAAGCGGCAAACTCGTTTTGTCTCCCGTAAACCAGCAAAAGTTATAATTTCTTCAATTGAAGCTGTTGCAGAGTCAATGGGTCTTAAGGTCCATTCTCGCAATTACAAGGTGAGGCTTGAAGGCGTTTCTGCAAACAGGGTTGGACAATTTGCAGTGGTCTTGGAGGTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAGTTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCAGGGACTATGCCAAATTCTAATCTGCGCAAGCAAATGACTTTATAATCCAATTCTTGCGGGTATGATGCAAATCTAATTAGAAGAGCACTGAAAGGCTGAAAGCTTCAGCTGGTCCCCGAACATACTAAAAAGTTAGCATGCTTCTTCTAGCTATCACAATGCACAGCATACGCTGTCAACTTACAACATGGCTTAATAATCTTGGAAGAAGGAAGTAAAAAACCTATTGCAATGCATCTTGTAGCAAATCTACCCCCACAATGGTATACGAAAACAATCCATTATTTGGTTGGGGCAGAAATATATACTAAGGAATAACAGAAAAGAAACGATGATATTGTTTTTCATATCCCCAGTTCTGTATGTAAGGAGCGTGTTTGGGAGTTATTCAAATTCTCAAACACGCGTGTTTGAGAAATGCTGTTTTGTATTAAAAAAAAGCGTGTTTGATTGCAATAAATTAAAATTAAGTCTGTTCTAAAAATGAAAAACTATCACTA

Coding sequences of Glyma17g12250

Limit To All Plant Sequences

>Glyma17g12250.1   sequence type=CDS   gene model=Glyma17g12250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGGTGAGGAGAAAGATCGGCAAGTATGAGGTGGGTCGGACTATTGGCGAAGGCACCTTCGCCAAGGTTAAGTTCGCAAGAAACTCGGAGACAGGGGAGAGCGTGGCTATTAAAGTCATGGCTAAGACCACCATTCTCCAGCACAGAATGGTTGAACAGATTAAAAGAGAGATATCCATTATGAAGATTGTCAGGCATCCTAATATAGTTAGATTGCACGAGGTTTTGGCTAGCCAGACCAAGATCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATTGTTCAGCTGGGAAAGCTTTCTGAAAATGAATCTAGGCACTACTTTCAACAACTTATAGACGCAGTTGATCATTGTCATAGAAAGGGTGTGTACCATAGAGACTTGAAGCCTGAAAATCTTCTTCTTGATGCTTACGGAAATTTGAAGGTTTCTGACTTTGGATTGAGTGCATTGACTAAACAGGGTGCTGACCTTCTTCACACCACTTGTGGGACCCCAAACTATGTTGCCCCTGAGGTACTCAGCAATAGAGGATATGATGGTGCAGCAGCTGATGTTTGGTCATGTGGAGTCATCCTATATGTTCTAATGGCTGGATATCTTCCTTTTGAGGAGGCAGACCTTCCAACACTGTATAGAAGGATCAATGCTGCAGAATTTGTTTGCCCATTCTGGTTTTCTGCTGACACAAAGTCATTCATACAAAAAATTCTGGATCCTAATCCTAAAACACGGGTGAAAATTGAAGAAATAAGGAAAGATCCATGGTTCAAGAAAAACTATTTTCCTGTCAAACTCGGGGAAGATGAGCAAGTGAATTTGGATGATGTTCGGGCTGTTTTTGATGATATTGAGGACCAGTATGTTTCTGAAAGGTCAGAAATTACTGAGGGAGGTCCTCTGATAATGAATGCATTTGAGATGATTGCTTTATCACAAGGGTTGAATCTTTCACCACTATTTGATAGGCATCAGGATTATGTAAAGCGGCAAACTCGTTTTGTCTCCCGTAAACCAGCAAAAGTTATAATTTCTTCAATTGAAGCTGTTGCAGAGTCAATGGGTCTTAAGGTCCATTCTCGCAATTACAAGGTGAGGCTTGAAGGCGTTTCTGCAAACAGGGTTGGACAATTTGCAGTGGTCTTGGAGGTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAGTTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCAGGGACTATGCCAAATTCTAATCTGCGCAAGCAAATGACTTTATAA

>Glyma17g12250.2   sequence type=CDS   gene model=Glyma17g12250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGGTGAGGAGAAAGATCGGCAAGTATGAGGTGGGTCGGACTATTGGCGAAGGCACCTTCGCCAAGGTTAAGTTCGCAAGAAACTCGGAGACAGGGGAGAGCGTGGCTATTAAAGTCATGGCTAAGACCACCATTCTCCAGCACAGAATGGTTGAACAGATTAAAAGAGAGATATCCATTATGAAGATTGTCAGGCATCCTAATATAGTTAGATTGCACGAGGTTTTGGCTAGCCAGACCAAGATCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATTCTGGGAAAGCTTTCTGAAAATGAATCTAGGCACTACTTTCAACAACTTATAGACGCAGTTGATCATTGTCATAGAAAGGGTGTGTACCATAGAGACTTGAAGCCTGAAAATCTTCTTCTTGATGCTTACGGAAATTTGAAGGTTTCTGACTTTGGATTGAGTGCATTGACTAAACAGGGTGCTGACCTTCTTCACACCACTTGTGGGACCCCAAACTATGTTGCCCCTGAGGTACTCAGCAATAGAGGATATGATGGTGCAGCAGCTGATGTTTGGTCATGTGGAGTCATCCTATATGTTCTAATGGCTGGATATCTTCCTTTTGAGGAGGCAGACCTTCCAACACTGTATAGAAGGATCAATGCTGCAGAATTTGTTTGCCCATTCTGGTTTTCTGCTGACACAAAGTCATTCATACAAAAAATTCTGGATCCTAATCCTAAAACACGGGTGAAAATTGAAGAAATAAGGAAAGATCCATGGTTCAAGAAAAACTATTTTCCTGTCAAACTCGGGGAAGATGAGCAAGTGAATTTGGATGATGTTCGGGCTGTTTTTGATGATATTGAGGACCAGTATGTTTCTGAAAGGTCAGAAATTACTGAGGGAGGTCCTCTGATAATGAATGCATTTGAGATGATTGCTTTATCACAAGGGTTGAATCTTTCACCACTATTTGATAGGCATCAGGATTATGTAAAGCGGCAAACTCGTTTTGTCTCCCGTAAACCAGCAAAAGTTATAATTTCTTCAATTGAAGCTGTTGCAGAGTCAATGGGTCTTAAGGTCCATTCTCGCAATTACAAGGTGAGGCTTGAAGGCGTTTCTGCAAACAGGGTTGGACAATTTGCAGTGGTCTTGGAGGTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAGTTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCAGGGACTATGCCAAATTCTAATCTGCGCAAGCAAATGACTTTATAA

Predicted protein sequences of Glyma17g12250

Limit To All Plant Sequences

>Glyma17g12250.1   sequence type=predicted peptide   gene model=Glyma17g12250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKVRRKIGKYEVGRTIGEGTFAKVKFARNSETGESVAIKVMAKTTILQHRMVEQIKREISIMKIVRHPNIVRLHEVLASQTKIYIILEFVMGGELYDKIVQLGKLSENESRHYFQQLIDAVDHCHRKGVYHRDLKPENLLLDAYGNLKVSDFGLSALTKQGADLLHTTCGTPNYVAPEVLSNRGYDGAAADVWSCGVILYVLMAGYLPFEEADLPTLYRRINAAEFVCPFWFSADTKSFIQKILDPNPKTRVKIEEIRKDPWFKKNYFPVKLGEDEQVNLDDVRAVFDDIEDQYVSERSEITEGGPLIMNAFEMIALSQGLNLSPLFDRHQDYVKRQTRFVSRKPAKVIISSIEAVAESMGLKVHSRNYKVRLEGVSANRVGQFAVVLEVFEVAPSLFMVDVRKATGDTFDYHKFYKNFCGKLGNIIWRPAGTMPNSNLRKQMTL*

>Glyma17g12250.2   sequence type=predicted peptide   gene model=Glyma17g12250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKVRRKIGKYEVGRTIGEGTFAKVKFARNSETGESVAIKVMAKTTILQHRMVEQIKREISIMKIVRHPNIVRLHEVLASQTKIYIILEFVMGGELYDKILGKLSENESRHYFQQLIDAVDHCHRKGVYHRDLKPENLLLDAYGNLKVSDFGLSALTKQGADLLHTTCGTPNYVAPEVLSNRGYDGAAADVWSCGVILYVLMAGYLPFEEADLPTLYRRINAAEFVCPFWFSADTKSFIQKILDPNPKTRVKIEEIRKDPWFKKNYFPVKLGEDEQVNLDDVRAVFDDIEDQYVSERSEITEGGPLIMNAFEMIALSQGLNLSPLFDRHQDYVKRQTRFVSRKPAKVIISSIEAVAESMGLKVHSRNYKVRLEGVSANRVGQFAVVLEVFEVAPSLFMVDVRKATGDTFDYHKFYKNFCGKLGNIIWRPAGTMPNSNLRKQMTL*

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