Glyma17g12240 - SoyBase

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Report for Sequence Feature Glyma17g12240

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9259647
stop:	9262056
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G20190	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:6814093-6815171 FORWARD LENGTH=290	SoyBase	E_val: 2.00E-54	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR23083	Panther	O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE, OGT	JGI		ISS
PTHR23083:SF102	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PTHR26312	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR26312:SF35	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_F4K464	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tetratricopeptide repeat domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4K464_ARATH	SoyBase	E_val: 9.00E-52	ISS
UniRef100_I1MU80	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MU80_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g12240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12240

Paralog	Evidence	Comments
Glyma13g23470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g113600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g12240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g12240

Limit To All Plant Sequences

>Glyma17g12240.2   sequence type=transcript   gene model=Glyma17g12240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAACGTTTCCCAGCCTCACCAGTCACCCTTAAAAAATCTTCACTCTCTCTCTCTCACTAACCACACCTGATCTCTTCACAGCATCACCACCGTCAAAACCCAATCCAACGGTTATAAATCTCAGATGCGGGTCCCGCTTCACGTGAATCAACTGTTACCTCCCTCTCCGATGCGTGAGTCAGCGAGTGTTCTATTAAATAGGGTTTCATTTCACTGTGAACAACCAAGATCTTCAGATCCATGACAACAACGACAATGCTTCTTCGTAGCTCATCCACGCCGATTCTCAATTCTCGCATCCCTCACTCGAATCTCAACCCCAAGGATTCGCCTCACGAACCTGAAATCCTTCACCGGAGCCCGCGGACGCGCTCGCTCACGCTCTCCGCGTCGTTGAGTTCGCTGTCGCCTAGCAGAATGACGCGAGCGTTGTCGGAGACTGATCTTTCCGCGCGCTCCAAAACGGCGTCGTTCGGCTCCGCTTTGTTTTCCTTCTACGAGTCGGACGATGGAGACGTTGCGGTTGTTGAAGGAGGCGGAGTTGGCGGCGGCGGCGGTGGATGGGACAATGGTGACGGCGGAGGTTCGGGGTTTTGGGATTCGAATAACGGGAACGATAGCACAGACTTGTATTACCGGACGATGATTGAAGCCAATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAGGTTCGAGGGGACTATGTGAAAGCGGAGGAGTACTGTTCTAGAGCGATATTGGCGAATCCGAATGATGGGAAGGTGCTATCGATGTATGCAGATTTGATATGGGAGAGCCAAAAGGATGCTTCGCGTGCTGAGACTTATTTTGATCAAGCGGTTAAAGCAGCTCCTGATGACTGGTAACAAACATCAAACTCTTGGTTGTTCTCTTTATGGTTGAGATTATTCATTATTCATCATATGTTTATGGCGTGTTTGGACACCAAGTACATGATGGATTAAGTTAAAATTGAGTGATGATGTATTTTTTTTTTTTATATTGCCATATCATTGTAGATTGTTATATATAGAAAAATTGTTGATTTGTTTTATTAATAATTACTATATTCAAAGAAAAAGTAATTGATTCATTGTATAAAAACTTTTATAGCGTATAATTAAATTGAAGAAAAGTTATTTGGAATAAAATGATTACATGAATTGAATACGGAAAATTATCGAGTATTATTTGTGTTGACACAGTATTCATGCCAAAAATTTCCTTTCTGTTTGAAATGGGCACTTGAATAAAGGTTAAAAAAACCCTGGTATATTAAAGAAGCA

Coding sequences of Glyma17g12240

Limit To All Plant Sequences

>Glyma17g12240.1   sequence type=CDS   gene model=Glyma17g12240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAACAACGACAATGCTTCTTCGTAGCTCATCCACGCCGATTCTCAATTCTCGCATCCCTCACTCGAATCTCAACCCCAAGGATTCGCCTCACGAACCTGAAATCCTTCACCGGAGCCCGCGGACGCGCTCGCTCACGCTCTCCGCGTCGTTGAGTTCGCTGTCGCCTAGCAGAATGACGCGAGCGTTGTCGGAGACTGATCTTTCCGCGCGCTCCAAAACGGCGTCGTTCGGCTCCGCTTTGTTTTCCTTCTACGAGTCGGACGATGGAGACGTTGCGGTTGTTGAAGGAGGCGGAGTTGGCGGCGGCGGCGGTGGATGGGACAATGGTGACGGCGGAGGTTCGGGGTTTTGGGATTCGAATAACGGGAACGATAGCACAGACTTGTATTACCGGACGATGATTGAAGCCAATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAGGTTCGAGGGGACTATGTGAAAGCGGAGGAGTACTGTTCTAGAGCGATATTGGCGAATCCGAATGATGGGAAGGTGCTATCGATGTATGCAGATTTGATATGGGAGAGCCAAAAGGATGCTTCGCGTGCTGAGACTTATTTTGATCAAGCGGTTAAAGCAGCTCCTGATGACTGTTATGTTCTGGCATCTTACGCTCATTTTCTTTGGGACGCTGAGGAAGAGGAAGATGATGAAGTGCAAGAAGATTACTCTGAAATATCTCCCAGTTTCTTACATGGAGCTGCTCCACCACCACCTCCTCCTTTAGCTGCTGCTTCTTAA

>Glyma17g12240.2   sequence type=CDS   gene model=Glyma17g12240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAACAACGACAATGCTTCTTCGTAGCTCATCCACGCCGATTCTCAATTCTCGCATCCCTCACTCGAATCTCAACCCCAAGGATTCGCCTCACGAACCTGAAATCCTTCACCGGAGCCCGCGGACGCGCTCGCTCACGCTCTCCGCGTCGTTGAGTTCGCTGTCGCCTAGCAGAATGACGCGAGCGTTGTCGGAGACTGATCTTTCCGCGCGCTCCAAAACGGCGTCGTTCGGCTCCGCTTTGTTTTCCTTCTACGAGTCGGACGATGGAGACGTTGCGGTTGTTGAAGGAGGCGGAGTTGGCGGCGGCGGCGGTGGATGGGACAATGGTGACGGCGGAGGTTCGGGGTTTTGGGATTCGAATAACGGGAACGATAGCACAGACTTGTATTACCGGACGATGATTGAAGCCAATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAGGTTCGAGGGGACTATGTGAAAGCGGAGGAGTACTGTTCTAGAGCGATATTGGCGAATCCGAATGATGGGAAGGTGCTATCGATGTATGCAGATTTGATATGGGAGAGCCAAAAGGATGCTTCGCGTGCTGAGACTTATTTTGATCAAGCGGTTAAAGCAGCTCCTGATGACTGGTAA

Predicted protein sequences of Glyma17g12240

Limit To All Plant Sequences

>Glyma17g12240.1   sequence type=predicted peptide   gene model=Glyma17g12240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTTTMLLRSSSTPILNSRIPHSNLNPKDSPHEPEILHRSPRTRSLTLSASLSSLSPSRMTRALSETDLSARSKTASFGSALFSFYESDDGDVAVVEGGGVGGGGGGWDNGDGGGSGFWDSNNGNDSTDLYYRTMIEANPGNPLFLGNYARYLKEVRGDYVKAEEYCSRAILANPNDGKVLSMYADLIWESQKDASRAETYFDQAVKAAPDDCYVLASYAHFLWDAEEEEDDEVQEDYSEISPSFLHGAAPPPPPPLAAAS*

>Glyma17g12240.2   sequence type=predicted peptide   gene model=Glyma17g12240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTTTMLLRSSSTPILNSRIPHSNLNPKDSPHEPEILHRSPRTRSLTLSASLSSLSPSRMTRALSETDLSARSKTASFGSALFSFYESDDGDVAVVEGGGVGGGGGGWDNGDGGGSGFWDSNNGNDSTDLYYRTMIEANPGNPLFLGNYARYLKEVRGDYVKAEEYCSRAILANPNDGKVLSMYADLIWESQKDASRAETYFDQAVKAAPDDW*

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