Glyma17g12160 - SoyBase

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Report for Sequence Feature Glyma17g12160

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9193112
stop:	9194807
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G32300	AT	Annotation by Michelle Graham. TAIR10: uclacyanin 1 \| chr2:13722510-13723464 FORWARD LENGTH=261	SoyBase	E_val: 5.00E-25	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
PF02298	PFAM	Plastocyanin-like domain	JGI		ISS
UniRef100_G7JE50	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cucumber peeling cupredoxin n=1 Tax=Medicago truncatula RepID=G7JE50_MEDTR	SoyBase	E_val: 6.00E-48	ISS
UniRef100_I1MU73	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MU73_SOYBN	SoyBase	E_val: 5.00E-153	ISS

Expression Patterns of Glyma17g12160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g12160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g113000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g12160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g12160

Limit To All Plant Sequences

>Glyma17g12160.2   sequence type=CDS   gene model=Glyma17g12160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACTTCCAAAGCTTCTCTCTTCTCATACACATTGGAGCACAGAAAGAGCCATCACACGGGCCACCTGATACACAAAAACAACAACATATGATGGCTCAATTAAGGAATGTGGCAATTCTTGTCGTAGTCGTTGTGGCTGCAGTGTTACTACAGAGCACAGAAGCTAAAGATTACGAGGTGGGAGGTGCCACAGGTTGGACTAGTTTTCCTCCTGGTGGTGCTTCTTTCTATTCCAAATGGGCTGCAAATTTTACATTCAAACTAAACGACAGTCTAGTCTTCAACTTCGAATCTGGAAGCCACAGTGTGGTGGAACTTACCAAAGCTAACTATGAAAACTGTGAAGTCGATAACAACATCAAAGCCTTTAATAGAGGACCAGCTAGAGTCACCCTCAATCGCACAGGAGAATTCTACTTCTCCTGTACCTTCTCAGGTCATTGCAGCAGTGGCCAAAAGCTAAGCATTAAGGTCACTGATTCTTCATCACCAGCACCTCAGAAAGCACCAGCTGAAGGTCCTTCAGCTTCTGCTCCTCCACCACAGAATGCCCCAGCTGAAGGTCCTAATTCAGCTTCTCCTCCTGCATCTGGTTCAGGTTCCAATGAAGGAGCTCCATCATCCCAAACTGAACCAGCTCCTATAGCCCCTCCACCACACGGCTCAGCCACACTTCTTGCTTCTACCTTCTCTCTATTCCTCATCACCATTGCCATCAATTTTTTGTCTCATTTTTAG

Predicted protein sequences of Glyma17g12160

Limit To All Plant Sequences

>Glyma17g12160.2   sequence type=predicted peptide   gene model=Glyma17g12160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHFQSFSLLIHIGAQKEPSHGPPDTQKQQHMMAQLRNVAILVVVVVAAVLLQSTEAKDYEVGGATGWTSFPPGGASFYSKWAANFTFKLNDSLVFNFESGSHSVVELTKANYENCEVDNNIKAFNRGPARVTLNRTGEFYFSCTFSGHCSSGQKLSIKVTDSSSPAPQKAPAEGPSASAPPPQNAPAEGPNSASPPASGSGSNEGAPSSQTEPAPIAPPPHGSATLLASTFSLFLITIAINFLSHF*

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