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Report for Sequence Feature Glyma17g12140

Feature Type:gene_model
Chromosome:Gm17
Start:9178115
stop:9180766
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g12140
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G24150AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32295.1); Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:8724273-8725586 REVERSE LENGTH=343 SoyBaseE_val: 2.00E-84ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1LZP3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZP3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g12140
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12140
ParalogEvidenceComments
Glyma13g22660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12140 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g112800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g12140
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g12140
>Glyma17g12140.2   sequence type=CDS   gene model=Glyma17g12140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGCGCCCAGGGCCAAGGCCTTACGAGTGCGTGAGAAGGGCTTGGCACAGCGAGCGCCACCAACCCGTGAGAGGTTCCATCATTCAGCAGATTTTCAGGGTCGTCAATGACGCTCACAGTCCCGCAACCAAGAAGAACAAGGAATGGCAGGAGAAGCTCCCCGTGGTGGTTCTCAAGGCCGAAGAAATCATGTACTCCAAAGCCAATTCCGAGGCAGAGTACTTGAATCCTGACACGCTCTGGGACCGCCTCAATGATGCCGTTAACACAATCATACGGAGAGATGAGACAACCGAGACAGGAGGCCTCTTGCCCCCATGTGTTGAAGCTGCACTTAACTTGGGATGCAAAGCCGTGAGAACTTCCAGAAGTGATCGGCACAATAACCCAAGGACTTACCTTTCTCCAAGGATTCAACAGCCTCCTTGTCTGCCTCCTAAACCTGTTGCGGGGAATCCCTTGAACTATGCAAAAGTCACAACTCCTGCTGTGTCACCAATTCCTGTGCCAGATTCTATCCACCCAAATAGCAGGCTCATGGGTTCCTCTAAGTACCCTTTCTCAGAAGGTATCCCTTCTGGTCATCACCAGCCATTGACAATGGAAGCTAGACCCTCATTGAACTTGGGTTCAGTTTACCCTTTGTACTATGGTTATGAAGCCAGAGAACCTGAACCTTGGACGACTGCTACAGATACCACGTGTTCTGATACAATCTTTGTTGGCAGACCAGTCATTTCAGTCCCTGAGCCTTCAGGAATTGGTCTATCGGAAAACTTCTCCTATGGTACATTCCATCACGTTGCAAACAGAATGAGAAAAGAGACTGCTGTTGGCACTCAGGAGGCAGCACCAGATAGGGAATGTGACTTGTCTTTGAGGTTGGGTCAATGTCTGCATCCGTGTTCAAGCAGCAAAAGTAGTTCAGCATATGAAGTAGATGATGTTGGTTTAGGAGTTTCACCGGAAAGCTGCAAGTTTAGCCATTTATCCTTGCAGAGAAATAGAGAGTTCTGTTTTTATCCTAGAGAGACAGGTTATGGCACCATTGAGTCCACTTCTGGTAAATGTAATGTAGAGGGTGAAGATCTGAATTTAGAGGCAACTCTTCGGAAGCGCAAAGCACCTTTATGTGGTAACAACGAGGAAGATGGGCAATTTTGCCGGAATCCAGGGGTCCCATCCAATCGTTTTACTAGTAGGCCAGGTTCGTAG
Predicted protein sequences of Glyma17g12140
>Glyma17g12140.2   sequence type=predicted peptide   gene model=Glyma17g12140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPRPGPRPYECVRRAWHSERHQPVRGSIIQQIFRVVNDAHSPATKKNKEWQEKLPVVVLKAEEIMYSKANSEAEYLNPDTLWDRLNDAVNTIIRRDETTETGGLLPPCVEAALNLGCKAVRTSRSDRHNNPRTYLSPRIQQPPCLPPKPVAGNPLNYAKVTTPAVSPIPVPDSIHPNSRLMGSSKYPFSEGIPSGHHQPLTMEARPSLNLGSVYPLYYGYEAREPEPWTTATDTTCSDTIFVGRPVISVPEPSGIGLSENFSYGTFHHVANRMRKETAVGTQEAAPDRECDLSLRLGQCLHPCSSSKSSSAYEVDDVGLGVSPESCKFSHLSLQRNREFCFYPRETGYGTIESTSGKCNVEGEDLNLEATLRKRKAPLCGNNEEDGQFCRNPGVPSNRFTSRPGS*






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