Glyma17g12100 - SoyBase

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Report for Sequence Feature Glyma17g12100

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9135021
stop:	9137776
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G13290	AT	Annotation by Michelle Graham. TAIR10: beta-1,4-N-acetylglucosaminyltransferase family protein \| chr2:5512058-5513143 FORWARD LENGTH=361	SoyBase	E_val: 0	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003830	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	SoyBase	N/A	ISS
GO:0008375	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acetylglucosaminyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PTHR12224	Panther	BETA-1,4-MANNOSYL-GLYCOPROTEIN BETA-1,4-N-ACETYLGLUCOSAMINYL-TRANSFERASE	JGI		ISS
PF04724	PFAM	Glycosyltransferase family 17	JGI		ISS
UniRef100_G7JE73	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-responsive protein IAA20 n=1 Tax=Medicago truncatula RepID=G7JE73_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MU65	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MU65_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g12100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12100

Paralog	Evidence	Comments
Glyma13g22730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g112400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g12100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g12100

Limit To All Plant Sequences

>Glyma17g12100.3   sequence type=transcript   gene model=Glyma17g12100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGGAATGATAGTAAATGGAGAAGATCAATCCAGAGGCAGAGTCCAAGCTGAGCACAACACTATTCTAGTTCTAGCTATTTTCTATTCCCACCTAGGAAGGATATTAACACCACCACCATCACCGATTTTCTCTCCCCTTCTATCGCACTTCCCAGCCTGAGATGGATTTTTCTCTTCCATTTCCACCGCCTAATCCTGTCTCTTCCTCACCTTCTGCAACTTCTCTAAGGTACTTCTTCTTCTTCTTCGCTTTCTATTCCCATTTTTCACCTTCAGAATTTGCATTCGGTGTGAAGCAAAATGCCTTCTTCACAATTCCGAGAGGTGAACATGGTCTTTCTGAATCCGATTGTCAAACTGGGGAAATCCGTTAGCATATTTCATGTTCCCCCTTCAAGTTCAACGCTTGGCTCCCCGGCCACGTCACATTTCTAGGCAAAAACCTCCCATTTTCTTTTGTGCATTGCTTCTATTACTACTGCCAATTTGTGTGGTTGGAATTTTTATCCATGGCCAAAAGATTACTTATTTCTTCCGACCACTTTGGGACAACCCCCCTGCCCCCTTCACAAGTATACCTCACTATTATGCAGAAAATGTCTCTATGGAACACCTTTGCCGCCTTCATGGCTGGTCCCTTCGTTCCAAGCCTCGTCGCATTTTTGATGCTGTTATCTTCAGCAATGAGTTAGACATGCTAGAGATTAGATGGCACGAACTTTCTCCCTATGTATCAAAGTTTGTGATCCTTGAGTCCAATACTACGTTTACGGGCATTCCAAAACGTCTCTTCTTCGCCTTAAACCGGGAAAGATTTTCCTTTGCCAAACAAAAGATTGTCCATGACATTTATCCTGGCAGAATTGCAGTCCCTGGATCGCACGAGGACCCATTTGTGCTTGAGTCAAAACAGCGTGGGGCGATGAATGCATTGTTACGCCGTGCAGGCATTTCCAACGGTGATATTCTTCTCATGTCAGATACAGATGAGATTCCAAGTCCTCATACATTGAAACTGCTTCAGTGGTGTGATGGGATTCCTCCCATAATGCATCTTGAACTGAGGAATTACATGTACTCATTTGAGTTCCCTGTGGACTACAGCAGCTGGCGTGCCACTGCCCACGTCTATGGTCCCCGATCACAATACCGGCACTCACGCCAGACGGATGTAATTTTCTCAGATGCAGGATGGCACTGCAGCTTTTGCTTTCAGTATATTTCAGAGTTTGTGTTCAAGATGACTGCCTATAGCCATGCAGACCGCGTGAAAAGGAAATATTTTCTGAGTCATTCAAGAATTCAGGACATTATCTGCAAGGGAGATGATCTTTGTGATATGCTCCCTGAAGAATACTCTTTCCAGGAGTTGATTAAAAAGATGGGGTCAATACCCCGGTCAGCTTCTGCGGTTCATCTTCCTGCCTACTTGATAGAGAATGCAGATAAATTCAAGTTCCTTCTTCCTGGAGGCTGCTTAAGACCACCAGAATAAATGACCCTTTTTGCGAAGTAACACATAACCTAGATTTGCACTTTAGCTTTAGATTTTGGTAGGATACATGACATAGCACTAAGTCTCGTAGTTTTATCATTGTTCTTGAATATGAAGCAGCAGGTATAAATTGCATGGAGAAGCAGAATATAGCACAGTCACTATAGCAATTTGTAGCTGTAGAAACTCATCCCGCTCACATATCTTTTTGTTAAGTATAGGAGATAGTGGAGAGAACTAGTAATGCGGTGGCTTAATAAACAAAGAGCTTCAACTGACAGAAATGGTGATAAAAGAAAATTAATACTTTTGTGCTTGTGTCTCCTTATGAAAGCGGTTTCTTTGCACGAATGGATTGGAACCATAAATAAATTTCATCGGTCAATTATTATTTCTCTAAGAGGGTAAAAGACATAGAAATGTTAGTAAGATTTGCG

>Glyma17g12100.4   sequence type=transcript   gene model=Glyma17g12100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGGTATCGTGGAATGATAGTAAATGGAGAAGATCAATCCAGAGGCAGAGTCCAAGCTGAGCACAACACTATTCTAGTTCTAGCTATTTTCTATTCCCACCTAGGAAGGATATTAACACCACCACCATCACCGATTTTCTCTCCCCTTCTATCGCACTTCCCAGCCTGAGATGGATTTTTCTCTTCCATTTCCACCGCCTAATCCTGTCTCTTCCTCACCTTCTGCAACTTCTCTAAGGTGAACATGGTCTTTCTGAATCCGATTGTCAAACTGGGGAAATCCGTTAGCATATTTCATGTTCCCCCTTCAAGTTCAACGCTTGGCTCCCCGGCCACGTCACATTTCTAGGCAAAAACCTCCCATTTTCTTTTGTGCATTGCTTCTATTACTACTGCCAATTTGTGTGGTTGGAATTTTTATCCATGGCCAAAAGATTACTTATTTCTTCCGACCACTTTGGGACAACCCCCCTGCCCCCTTCACAAGTATACCTCACTATTATGCAGAAAATGTCTCTATGGAACACCTTTGCCGCCTTCATGGCTGGTCCCTTCGTTCCAAGCCTCGTCGCATTTTTGATGCTGTTATCTTCAGCAATGAGTTAGACATGCTAGAGATTAGATGGCACGAACTTTCTCCCTATGTATCAAAGTTTGTGATCCTTGAGTCCAATACTACGTTTACGGGCATTCCAAAACGTCTCTTCTTCGCCTTAAACCGGGAAAGATTTTCCTTTGCCAAACAAAAGATTGTCCATGACATTTATCCTGGCAGAATTGCAGTCCCTGGATCGCACGAGGACCCATTTGTGCTTGAGTCAAAACAGCGTGGGGCGATGAATGCATTGTTACGCCGTGCAGGCATTTCCAACGGTGATATTCTTCTCATGTCAGATACAGATGAGATTCCAAGTCCTCATACATTGAAACTGCTTCAGTGGTGTGATGGGATTCCTCCCATAATGCATCTTGAACTGAGGAATTACATGTACTCATTTGAGTTCCCTGTGGACTACAGCAGCTGGCGTGCCACTGCCCACGTCTATGGTCCCCGATCACAATACCGGCACTCACGCCAGACGGATGTAATTTTCTCAGATGCAGGATGGCACTGCAGCTTTTGCTTTCAGTATATTTCAGAGTTTGTGTTCAAGATGACTGCCTATAGCCATGCAGACCGCGTGAAAAGGAAATATTTTCTGAGTCATTCAAGAATTCAGGACATTATCTGCAAGGGAGATGATCTTTGTGATATGCTCCCTGAAGAATACTCTTTCCAGGAGTTGATTAAAAAGATGGGGTCAATACCCCGGTCAGCTTCTGCGGTTCATCTTCCTGCCTACTTGATAGAGAATGCAGATAAATTCAAGTTCCTTCTTCCTGGAGGCTGCTTAAGACCACCAGAATAAATGACCCTTTTTGCGAAGTAACACATAACCTAGATTTGCACTTTAGCTTTAGATTTTGGTAGGATACATGACATAGCACTAAGTCTCGTAGTTTTATCATTGTTCTTGAATATGAAGCAGCAGGTATAAATTGCATGGAGAAGCAGAATATAGCACAGTCACTATAGCAATTTGTAGCTGTAGAAACTCATCCCGCTCACATATCTTTTTGTTAAGTATAGGAGATAGTGGAGAGAACTAGTAATGCGGTGGCTTAATAAACAAAGAGCTTCAACTGACAGAAATGGTGATAAAAGAAAATTAATACTTTTGTGCTTGTGTCTCCTTATGAAAGCGGTTTCTTTGCACGAATGGATTGGAACCATAAATAAATTTCATCGGTCAATTATTATTTCTCTAAGAGGGTAAAAGACATAGAAATGTTAGTAAGATTTGCGTTGCTATTTTATTTCCCTTTATCTTTTCTATGTTCTTGAAT

Coding sequences of Glyma17g12100

Limit To All Plant Sequences

>Glyma17g12100.2   sequence type=CDS   gene model=Glyma17g12100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACACCTTTGCCGCCTTCATGGCTGGTCCCTTCGTTCCAAGCCTCGTCGCATTTTTGATGCTGTTATCTTCAGCAATGAGTTAGACATGCTAGAGATTAGATGGCACGAACTTTCTCCCTATGTATCAAAGTTTGTGATCCTTGAGTCCAATACTACGTTTACGGGCATTCCAAAACGTCTCTTCTTCGCCTTAAACCGGGAAAGATTTTCCTTTGCCAAACAAAAGATTGTCCATGACATTTATCCTGGCAGAATTGCAGTCCCTGGATCGCACGAGGACCCATTTGTGCTTGAGTCAAAACAGCGTGGGGCGATGAATGCATTGTTACGCCGTGCAGGCATTTCCAACGGTGATATTCTTCTCATGTCAGATACAGATGAGATTCCAAGTCCTCATACATTGAAACTGCTTCAGTGGTGTGATGGGATTCCTCCCATAATGCATCTTGAACTGAGGAATTACATGTACTCATTTGAGTTCCCTGTGGACTACAGCAGCTGGCGTGCCACTGCCCACGTCTATGGTCCCCGATCACAATACCGGCACTCACGCCAGACGGATGTAATTTTCTCAGATGCAGGATGGCACTGCAGCTTTTGCTTTCAGTATATTTCAGAGTTTGTGTTCAAGATGACTGCCTATAGCCATGCAGACCGCGTGAAAAGGAAATATTTTCTGAGTCATTCAAGAATTCAGGACATTATCTGCAAGGGAGATGATCTTTGTGATATGCTCCCTGAAGAATACTCTTTCCAGGAGTTGATTAAAAAGATGGGGTCAATACCCCGGTCAGCTTCTGCGGTTCATCTTCCTGCCTACTTGATAGAGAATGCAGATAAATTCAAGTTCCTTCTTCCTGGAGGCTGCTTAAGACCACCAGAATAA

>Glyma17g12100.3   sequence type=CDS   gene model=Glyma17g12100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCCCCCTTCAAGTTCAACGCTTGGCTCCCCGGCCACGTCACATTTCTAGGCAAAAACCTCCCATTTTCTTTTGTGCATTGCTTCTATTACTACTGCCAATTTGTGTGGTTGGAATTTTTATCCATGGCCAAAAGATTACTTATTTCTTCCGACCACTTTGGGACAACCCCCCTGCCCCCTTCACAAGTATACCTCACTATTATGCAGAAAATGTCTCTATGGAACACCTTTGCCGCCTTCATGGCTGGTCCCTTCGTTCCAAGCCTCGTCGCATTTTTGATGCTGTTATCTTCAGCAATGAGTTAGACATGCTAGAGATTAGATGGCACGAACTTTCTCCCTATGTATCAAAGTTTGTGATCCTTGAGTCCAATACTACGTTTACGGGCATTCCAAAACGTCTCTTCTTCGCCTTAAACCGGGAAAGATTTTCCTTTGCCAAACAAAAGATTGTCCATGACATTTATCCTGGCAGAATTGCAGTCCCTGGATCGCACGAGGACCCATTTGTGCTTGAGTCAAAACAGCGTGGGGCGATGAATGCATTGTTACGCCGTGCAGGCATTTCCAACGGTGATATTCTTCTCATGTCAGATACAGATGAGATTCCAAGTCCTCATACATTGAAACTGCTTCAGTGGTGTGATGGGATTCCTCCCATAATGCATCTTGAACTGAGGAATTACATGTACTCATTTGAGTTCCCTGTGGACTACAGCAGCTGGCGTGCCACTGCCCACGTCTATGGTCCCCGATCACAATACCGGCACTCACGCCAGACGGATGTAATTTTCTCAGATGCAGGATGGCACTGCAGCTTTTGCTTTCAGTATATTTCAGAGTTTGTGTTCAAGATGACTGCCTATAGCCATGCAGACCGCGTGAAAAGGAAATATTTTCTGAGTCATTCAAGAATTCAGGACATTATCTGCAAGGGAGATGATCTTTGTGATATGCTCCCTGAAGAATACTCTTTCCAGGAGTTGATTAAAAAGATGGGGTCAATACCCCGGTCAGCTTCTGCGGTTCATCTTCCTGCCTACTTGATAGAGAATGCAGATAAATTCAAGTTCCTTCTTCCTGGAGGCTGCTTAAGACCACCAGAATAA

>Glyma17g12100.4   sequence type=CDS   gene model=Glyma17g12100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCCCCCTTCAAGTTCAACGCTTGGCTCCCCGGCCACGTCACATTTCTAGGCAAAAACCTCCCATTTTCTTTTGTGCATTGCTTCTATTACTACTGCCAATTTGTGTGGTTGGAATTTTTATCCATGGCCAAAAGATTACTTATTTCTTCCGACCACTTTGGGACAACCCCCCTGCCCCCTTCACAAGTATACCTCACTATTATGCAGAAAATGTCTCTATGGAACACCTTTGCCGCCTTCATGGCTGGTCCCTTCGTTCCAAGCCTCGTCGCATTTTTGATGCTGTTATCTTCAGCAATGAGTTAGACATGCTAGAGATTAGATGGCACGAACTTTCTCCCTATGTATCAAAGTTTGTGATCCTTGAGTCCAATACTACGTTTACGGGCATTCCAAAACGTCTCTTCTTCGCCTTAAACCGGGAAAGATTTTCCTTTGCCAAACAAAAGATTGTCCATGACATTTATCCTGGCAGAATTGCAGTCCCTGGATCGCACGAGGACCCATTTGTGCTTGAGTCAAAACAGCGTGGGGCGATGAATGCATTGTTACGCCGTGCAGGCATTTCCAACGGTGATATTCTTCTCATGTCAGATACAGATGAGATTCCAAGTCCTCATACATTGAAACTGCTTCAGTGGTGTGATGGGATTCCTCCCATAATGCATCTTGAACTGAGGAATTACATGTACTCATTTGAGTTCCCTGTGGACTACAGCAGCTGGCGTGCCACTGCCCACGTCTATGGTCCCCGATCACAATACCGGCACTCACGCCAGACGGATGTAATTTTCTCAGATGCAGGATGGCACTGCAGCTTTTGCTTTCAGTATATTTCAGAGTTTGTGTTCAAGATGACTGCCTATAGCCATGCAGACCGCGTGAAAAGGAAATATTTTCTGAGTCATTCAAGAATTCAGGACATTATCTGCAAGGGAGATGATCTTTGTGATATGCTCCCTGAAGAATACTCTTTCCAGGAGTTGATTAAAAAGATGGGGTCAATACCCCGGTCAGCTTCTGCGGTTCATCTTCCTGCCTACTTGATAGAGAATGCAGATAAATTCAAGTTCCTTCTTCCTGGAGGCTGCTTAAGACCACCAGAATAA

Predicted protein sequences of Glyma17g12100

Limit To All Plant Sequences

>Glyma17g12100.2   sequence type=predicted peptide   gene model=Glyma17g12100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHLCRLHGWSLRSKPRRIFDAVIFSNELDMLEIRWHELSPYVSKFVILESNTTFTGIPKRLFFALNRERFSFAKQKIVHDIYPGRIAVPGSHEDPFVLESKQRGAMNALLRRAGISNGDILLMSDTDEIPSPHTLKLLQWCDGIPPIMHLELRNYMYSFEFPVDYSSWRATAHVYGPRSQYRHSRQTDVIFSDAGWHCSFCFQYISEFVFKMTAYSHADRVKRKYFLSHSRIQDIICKGDDLCDMLPEEYSFQELIKKMGSIPRSASAVHLPAYLIENADKFKFLLPGGCLRPPE*

>Glyma17g12100.3   sequence type=predicted peptide   gene model=Glyma17g12100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFPLQVQRLAPRPRHISRQKPPIFFCALLLLLLPICVVGIFIHGQKITYFFRPLWDNPPAPFTSIPHYYAENVSMEHLCRLHGWSLRSKPRRIFDAVIFSNELDMLEIRWHELSPYVSKFVILESNTTFTGIPKRLFFALNRERFSFAKQKIVHDIYPGRIAVPGSHEDPFVLESKQRGAMNALLRRAGISNGDILLMSDTDEIPSPHTLKLLQWCDGIPPIMHLELRNYMYSFEFPVDYSSWRATAHVYGPRSQYRHSRQTDVIFSDAGWHCSFCFQYISEFVFKMTAYSHADRVKRKYFLSHSRIQDIICKGDDLCDMLPEEYSFQELIKKMGSIPRSASAVHLPAYLIENADKFKFLLPGGCLRPPE*

>Glyma17g12100.4   sequence type=predicted peptide   gene model=Glyma17g12100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFPLQVQRLAPRPRHISRQKPPIFFCALLLLLLPICVVGIFIHGQKITYFFRPLWDNPPAPFTSIPHYYAENVSMEHLCRLHGWSLRSKPRRIFDAVIFSNELDMLEIRWHELSPYVSKFVILESNTTFTGIPKRLFFALNRERFSFAKQKIVHDIYPGRIAVPGSHEDPFVLESKQRGAMNALLRRAGISNGDILLMSDTDEIPSPHTLKLLQWCDGIPPIMHLELRNYMYSFEFPVDYSSWRATAHVYGPRSQYRHSRQTDVIFSDAGWHCSFCFQYISEFVFKMTAYSHADRVKRKYFLSHSRIQDIICKGDDLCDMLPEEYSFQELIKKMGSIPRSASAVHLPAYLIENADKFKFLLPGGCLRPPE*

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